COG1704


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1704, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Magnetosome formation protein MamQ, lipoprotein antigen LemA family
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG1704 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2717 FBDBKF_06955 55123 55644 1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S1
1 group_311 FBDBKF_09260 83685 84281 -1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S1
2 group_2717 EHELCC_04015 130542 131063 -1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S2
3 group_311 EHELCC_10150 61823 62419 1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S2
4 group_2717 NLDBIP_04015 130338 130859 -1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S4
5 group_311 NLDBIP_10495 40094 40690 1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S4
6 group_2717 LHKJJB_09845 130452 130973 -1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S3
7 group_311 LHKJJB_10860 150838 151434 -1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S3
8 group_2717 HKOGLL_09130 60079 60600 1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S5
9 group_311 HKOGLL_13920 84139 84735 -1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family Morganella morganii S5
10 group_2717 F4V73_RS01150 242175 242696 1 LemA family protein Morganella psychrotolerans
11 group_311 F4V73_RS10705 271578 272171 1 LemA family protein Morganella psychrotolerans
12 group_311 PMI_RS00810 204061 204621 -1 LemA family protein Proteus mirabilis HI4320
13 group_311 PMI_RS13030 2887886 2888482 -1 LemA family protein Proteus mirabilis HI4320