Homologs in group_2116

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15900 FBDBKF_15900 34.9 Morganella morganii S1 comEA DNA uptake protein ComE or related DNA-binding protein
EHELCC_18500 EHELCC_18500 34.9 Morganella morganii S2 comEA DNA uptake protein ComE or related DNA-binding protein
NLDBIP_17335 NLDBIP_17335 34.9 Morganella morganii S4 comEA DNA uptake protein ComE or related DNA-binding protein
LHKJJB_17325 LHKJJB_17325 34.9 Morganella morganii S3 comEA DNA uptake protein ComE or related DNA-binding protein
HKOGLL_17070 HKOGLL_17070 34.9 Morganella morganii S5 comEA DNA uptake protein ComE or related DNA-binding protein
F4V73_RS16410 F4V73_RS16410 32.7 Morganella psychrotolerans - helix-hairpin-helix domain-containing protein

Distribution of the homologs in the orthogroup group_2116

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2116

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39694 9.94e-13 64 49 0 61 1 comEA ComE operon protein 1 Bacillus subtilis (strain 168)
Q57134 2.94e-12 61 50 1 62 1 HI_1008 Uncharacterized protein HI_1008 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5XI74 3.68e-11 62 49 0 59 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Rattus norvegicus
Q5XI74 1.89e-06 48 36 0 55 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Rattus norvegicus
Q3TGW2 3.68e-11 62 49 0 59 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Mus musculus
Q3TGW2 1.85e-06 48 36 0 55 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Mus musculus
Q7L9B9 3.68e-11 62 49 0 59 1 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Homo sapiens
Q7L9B9 6.08e-05 44 32 0 55 1 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Homo sapiens
Q3MHJ7 3.68e-11 62 49 0 59 2 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Bos taurus
Q3MHJ7 2.47e-05 45 34 0 55 2 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Bos taurus
Q6IND4 4.9e-11 61 40 1 85 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Xenopus laevis
Q6IND4 0.001 40 29 0 58 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Xenopus laevis
P0AAR9 2.58e-10 57 32 4 116 3 ybaV Uncharacterized protein YbaV Shigella flexneri
P0AAR8 2.58e-10 57 32 4 116 3 ybaV Uncharacterized protein YbaV Escherichia coli (strain K12)
Q6TEQ0 2.09e-09 57 45 0 59 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Danio rerio
Q6TEQ0 0.000165 43 37 0 54 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Danio rerio
D3SGB1 0.000134 43 32 1 79 1 TK90_2665 Deoxyribonuclease Thioalkalivibrio sp. (strain K90mix)
Q3V300 0.000169 43 36 3 87 2 Kif22 Kinesin-like protein KIF22 Mus musculus
P71353 0.000185 42 40 1 70 4 HI_0568 Uncharacterized protein HI_0568 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q6P3R1 0.00073 41 40 0 50 2 kif22 Kinesin-like protein KIF22 Xenopus tropicalis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00580
Feature type CDS
Gene -
Product ComEA family DNA-binding protein
Location 150760 - 151125 (strand: 1)
Length 366 (nucleotides) / 121 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2116
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12836 Helix-hairpin-helix motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1555 Replication, recombination and repair (L) L DNA uptake protein ComE or related DNA-binding protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02237 competence protein ComEA - -

Protein Sequence

MDKKTLSAFMASICLTLGLGLSPLSYADDISPSTSTMLIEKGDQKESAVSEVNASAQGKLDINSATLDELMTLKGIGKAKAQAIIDYREKVGRFASFDDLAKVFGIGMKLIEQNKDLIIIN

Flanking regions ( +/- flanking 50bp)

CTGTTTGCTGTTGAATATACAGTTATTTTTACAAAAAGGAGATGATTAAAATGGATAAAAAAACACTATCAGCATTTATGGCATCAATATGTTTAACATTAGGTTTAGGGTTATCACCACTCTCTTATGCCGATGATATATCGCCTTCAACATCAACCATGTTGATTGAAAAAGGGGATCAAAAAGAGAGTGCTGTCAGTGAGGTAAACGCTAGTGCACAAGGAAAGTTGGATATTAATAGTGCAACACTTGATGAATTAATGACGCTAAAAGGGATCGGAAAAGCAAAAGCGCAAGCCATTATCGATTATCGAGAAAAAGTGGGGCGTTTTGCTTCTTTTGATGATCTCGCCAAGGTCTTTGGTATTGGTATGAAGCTTATTGAACAAAATAAAGATCTAATTATTATCAACTAATTACTCGATAATACTGTACCCCTTTTTTGTGATCAAAAAGGGGTACAGAA