COG1555


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1555, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA uptake protein ComE or related DNA-binding protein
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG1555 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2116 FBDBKF_15900 31895 32227 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S1
1 group_2116 EHELCC_18500 19334 19666 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S2
2 group_2116 NLDBIP_17335 19334 19666 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S4
3 group_2116 LHKJJB_17325 36522 36854 -1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S3
4 group_2116 HKOGLL_17070 19334 19666 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S5
5 group_2116 F4V73_RS16410 98406 98741 -1 helix-hairpin-helix domain-containing protein Morganella psychrotolerans
6 group_2116 PMI_RS00580 150760 151125 1 ComEA family DNA-binding protein Proteus mirabilis HI4320