Orthogroup:group_2116


Homologs in group_2116

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15900 FBDBKF_15900 Morganella morganii S1 comEA DNA uptake protein ComE or related DNA-binding protein
EHELCC_18500 EHELCC_18500 Morganella morganii S2 comEA DNA uptake protein ComE or related DNA-binding protein
NLDBIP_17335 NLDBIP_17335 Morganella morganii S4 comEA DNA uptake protein ComE or related DNA-binding protein
LHKJJB_17325 LHKJJB_17325 Morganella morganii S3 comEA DNA uptake protein ComE or related DNA-binding protein
HKOGLL_17070 HKOGLL_17070 Morganella morganii S5 comEA DNA uptake protein ComE or related DNA-binding protein
F4V73_RS16410 F4V73_RS16410 Morganella psychrotolerans - helix-hairpin-helix domain-containing protein
PMI_RS00580 PMI_RS00580 Proteus mirabilis HI4320 - ComEA family DNA-binding protein

Distribution of group_2116 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2116 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2116

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2116.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 comEA 5
2 - 2

Product

# Product Occurence
1 DNA uptake protein ComE or related DNA-binding protein 5
2 helix-hairpin-helix domain-containing protein 1
3 ComEA family DNA-binding protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1555 7 L Replication, recombination and repair (L) DNA uptake protein ComE or related DNA-binding protein

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02237 7 competence protein ComEA - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12836 7 Helix-hairpin-helix motif

Annotations of the 25 SwissProt hits

Annotation Number of occurrences
ComE operon protein 1 1
Deoxyribonuclease 1
Endonuclease/exonuclease/phosphatase family domain-containing protein 1 6
Kinesin-like protein KIF22 6
Photosystem II extrinsic protein U 1
S1 RNA-binding domain-containing protein 1 3
Transcriptional accessory protein Tex 1
Uncharacterized protein HI_0568 1
Uncharacterized protein HI_1008 1
Uncharacterized protein NMA0194 1
Uncharacterized protein NMB0075 1
Uncharacterized protein YbaV 2

Protein length

Min length 110
Max length 121
Mean length (sd) 111.7 (4.1)
Median length 110.0

Protein length distribution