Homologs in group_2116

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_18500 EHELCC_18500 100.0 Morganella morganii S2 comEA DNA uptake protein ComE or related DNA-binding protein
NLDBIP_17335 NLDBIP_17335 100.0 Morganella morganii S4 comEA DNA uptake protein ComE or related DNA-binding protein
LHKJJB_17325 LHKJJB_17325 100.0 Morganella morganii S3 comEA DNA uptake protein ComE or related DNA-binding protein
HKOGLL_17070 HKOGLL_17070 100.0 Morganella morganii S5 comEA DNA uptake protein ComE or related DNA-binding protein
F4V73_RS16410 F4V73_RS16410 77.1 Morganella psychrotolerans - helix-hairpin-helix domain-containing protein
PMI_RS00580 PMI_RS00580 34.9 Proteus mirabilis HI4320 - ComEA family DNA-binding protein

Distribution of the homologs in the orthogroup group_2116

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2116

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q57134 1.83e-19 79 39 1 110 1 HI_1008 Uncharacterized protein HI_1008 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAR9 7.59e-18 75 46 4 112 3 ybaV Uncharacterized protein YbaV Shigella flexneri
P0AAR8 7.59e-18 75 46 4 112 3 ybaV Uncharacterized protein YbaV Escherichia coli (strain K12)
P39694 2.11e-10 58 54 1 53 1 comEA ComE operon protein 1 Bacillus subtilis (strain 168)
Q8N5C6 4.46e-07 50 41 1 53 1 SRBD1 S1 RNA-binding domain-containing protein 1 Homo sapiens
Q497V5 4.81e-06 47 43 0 46 2 Srbd1 S1 RNA-binding domain-containing protein 1 Mus musculus
Q5RDI0 6.76e-06 46 43 0 46 2 SRBD1 S1 RNA-binding domain-containing protein 1 Pongo abelii
Q51152 1.84e-05 45 47 1 53 4 NMB0075 Uncharacterized protein NMB0075 Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P57072 1.9e-05 45 47 1 53 4 NMA0194 Uncharacterized protein NMA0194 Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
P71353 3.81e-05 44 47 1 53 4 HI_0568 Uncharacterized protein HI_0568 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5REP4 7.02e-05 43 47 1 46 2 KIF22 Kinesin-like protein KIF22 Pongo abelii
Q14807 7.16e-05 43 47 1 46 1 KIF22 Kinesin-like protein KIF22 Homo sapiens
Q6IND4 8.14e-05 43 51 2 56 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Xenopus laevis
Q51062 8.96e-05 43 47 1 53 4 tex Transcriptional accessory protein Tex Neisseria gonorrhoeae
Q3MHJ7 0.000111 43 47 1 51 2 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Bos taurus
P74765 0.000125 42 33 4 84 1 psbU Photosystem II extrinsic protein U Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
Q7L9B9 0.00022 42 45 1 51 1 EEPD1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Homo sapiens
Q3TGW2 0.000311 42 47 1 51 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Mus musculus
Q5XI74 0.000336 41 47 1 51 1 Eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Rattus norvegicus
Q3V300 0.000611 41 47 1 46 2 Kif22 Kinesin-like protein KIF22 Mus musculus
Q6TEQ0 0.000735 40 52 1 50 2 eepd1 Endonuclease/exonuclease/phosphatase family domain-containing protein 1 Danio rerio

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_15900
Feature type CDS
Gene comEA
Product DNA uptake protein ComE or related DNA-binding protein
Location 31895 - 32227 (strand: 1)
Length 333 (nucleotides) / 110 (amino acids)

Contig

Accession contig_22
Length 68748 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2116
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12836 Helix-hairpin-helix motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1555 Replication, recombination and repair (L) L DNA uptake protein ComE or related DNA-binding protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02237 competence protein ComEA - -

Protein Sequence

MKTKWTSALLLTSALLTGGFFSTSALAQAAPPADSAQVQQSVAQETNRISINTATAEELARELSGVGPKKAQRIVEYRTENGPFTSAEQLKDVYGIGERIFTMNSDKIEL

Flanking regions ( +/- flanking 50bp)

AAAATTTTTGCGACACTCCGTTTCGTGCTAAACACAAAAGGAGAAATAGCATGAAAACAAAATGGACATCTGCATTATTATTAACATCAGCACTGTTAACCGGCGGTTTTTTCAGTACTTCCGCACTGGCTCAGGCTGCACCACCGGCAGACAGTGCGCAGGTTCAGCAGTCTGTTGCACAGGAAACAAACCGCATCAGCATTAATACCGCGACTGCGGAAGAACTGGCCCGGGAACTCAGTGGTGTCGGGCCGAAAAAAGCACAGCGGATTGTGGAATACCGCACGGAAAACGGACCATTTACTTCTGCGGAACAACTGAAGGATGTATATGGTATTGGTGAGCGTATTTTTACGATGAACAGCGATAAGATAGAGTTGTAATATCAGCAGAGGCTGATTTCCCTTCCCCGGGCTGACGGGGAAGGGAATAC