Homologs in group_2055

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15405 FBDBKF_15405 100.0 Morganella morganii S1 rbsC ribose ABC transporter permease
EHELCC_15765 EHELCC_15765 100.0 Morganella morganii S2 rbsC ribose ABC transporter permease
LHKJJB_16200 LHKJJB_16200 100.0 Morganella morganii S3 rbsC ribose ABC transporter permease
HKOGLL_15970 HKOGLL_15970 100.0 Morganella morganii S5 rbsC ribose ABC transporter permease
F4V73_RS17740 F4V73_RS17740 95.4 Morganella psychrotolerans rbsC ribose ABC transporter permease
PMI_RS00435 PMI_RS00435 92.2 Proteus mirabilis HI4320 rbsC ribose ABC transporter permease

Distribution of the homologs in the orthogroup group_2055

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2055

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGI1 1.35e-179 501 83 0 320 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 1.35e-179 501 83 0 320 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 1.35e-179 501 83 0 320 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P44736 6.84e-140 401 69 0 304 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36948 1.77e-104 311 50 3 323 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P77315 1.11e-57 192 38 3 319 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
P32720 1.14e-56 189 38 5 325 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
P0AE27 1.39e-54 184 37 3 317 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 1.39e-54 184 37 3 317 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
P44885 9.76e-48 166 35 7 302 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q1JUP6 6.46e-46 161 34 3 324 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
P0AGI7 6.49e-44 157 35 6 341 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 6.49e-44 157 35 6 341 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 6.49e-44 157 35 6 341 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 6.49e-44 157 35 6 341 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P37772 7.47e-42 150 36 5 298 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q8G846 2.05e-39 145 35 2 302 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
Q9F9B1 2.53e-39 145 34 4 303 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
P55569 1.86e-37 139 33 3 299 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q2PBL9 2.24e-37 139 32 4 310 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q2PBM2 4.26e-37 138 33 4 310 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
P45045 1.04e-36 138 32 8 365 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7N2D8 1.59e-36 137 32 4 310 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q8G845 3.38e-36 136 36 3 269 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
B1JLQ1 1.13e-35 135 33 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
P39328 2.21e-35 134 36 5 307 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
Q56036 2.33e-35 134 37 4 321 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q66EZ0 3.23e-35 134 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 3.23e-35 134 32 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FMJ8 4.95e-35 133 34 6 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q57321 7.65e-35 135 29 6 334 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
A4TQL6 1.27e-34 132 33 6 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 1.27e-34 132 33 6 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 1.27e-34 132 33 6 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 1.27e-34 132 33 6 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 1.27e-34 132 33 6 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
P23200 4.76e-33 127 36 4 321 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
A1JJ54 4.65e-30 120 31 1 285 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q8ZKQ2 7.69e-27 110 29 4 300 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 7.69e-27 110 29 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 7.69e-27 110 29 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
A1JJ53 9.96e-27 110 30 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q5PJE5 1.16e-26 110 29 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z2X7 3.07e-26 109 28 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q2PBM1 4.79e-25 106 28 1 291 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
A7FMJ9 2.18e-24 104 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B2K3F9 3.24e-24 103 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1IRU6 3.35e-24 103 33 2 281 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 3.35e-24 103 33 2 281 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
Q4J711 3.58e-24 104 29 8 287 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
B1JLQ2 3.88e-24 103 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 3.88e-24 103 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TQL7 8.69e-24 102 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 8.69e-24 102 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 8.69e-24 102 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 8.69e-24 102 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 8.69e-24 102 26 2 298 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
B1LFA1 9.91e-24 102 32 2 281 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
P77672 1.78e-23 102 32 2 281 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 1.78e-23 102 32 2 281 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q8XAY8 1.94e-23 102 32 2 281 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q0T4L8 4.6e-23 100 32 2 281 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
Q8Z2X6 5.45e-23 100 31 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
Q57HE2 8.04e-23 100 31 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
Q8ZKQ3 9.53e-23 100 31 3 305 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 9.53e-23 100 31 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A9MZG2 9.69e-23 100 31 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q83RD8 1.1e-22 99 32 2 281 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
B1LFA0 4.66e-21 95 29 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
P0AFS2 5e-21 95 29 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 5e-21 95 29 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 5e-21 95 29 3 285 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 5e-21 95 29 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 5e-21 95 29 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 5e-21 95 29 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
Q8X504 6.47e-21 94 30 3 282 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
A6TEB7 4.76e-20 92 33 4 285 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER2 6.1e-20 92 27 2 270 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
Q7N2D7 6.57e-20 92 27 2 299 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBL8 8.33e-19 89 27 1 260 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
A6TEB6 9.83e-19 88 28 1 282 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER3 4.66e-18 87 30 2 277 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_16605
Feature type CDS
Gene rbsC
Product ribose ABC transporter permease
Location 74241 - 75212 (strand: 1)
Length 972 (nucleotides) / 323 (amino acids)

Contig

Accession ZDB_533
Length 80662 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2055
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10440 ribose transport system permease protein ABC transporters -

Protein Sequence

MRTDSTPASKRWFSKEWLLEQKSLIALLILIVIVSMISPNFFTLNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASMVGADVNAIVAVAGALALGAAIGGVTGVIVAKGKVQAFIATLVMMLLLRGVTRVYTDGSPISTGFSDNADVFSWFGIGRLFGIPAPVWLMIVVFAAAWYLLHHTRLGRYIYALGGNESATRLSGINVDKIKIIVYALCGLLAALASVIEVARLSSAQPMAGNGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNALNLLGISSNYQMIVKAVVILLAVLVDNKSSK

Flanking regions ( +/- flanking 50bp)

TAATGGCCGCCGCAGTTGGCAAACAATATGGCGCAGGGCAGGAGTAAGATATGCGTACAGATTCAACCCCGGCGTCAAAACGCTGGTTTTCCAAAGAATGGCTGCTTGAGCAGAAATCACTGATCGCGCTGCTGATCCTGATTGTGATTGTCTCCATGATCAGCCCGAACTTTTTTACCCTGAATAACCTGTTCAATATTCTCCAGCAGACCTCTGTTAACGCCATTATGGCGGTGGGTATGACACTGGTGATCCTGACCTCCGGGATTGACCTGTCTGTCGGTTCTCTGCTGGCACTGACCGGTGCGGTGGCGGCCTCCATGGTGGGCGCGGATGTTAACGCCATTGTTGCGGTTGCGGGTGCGCTGGCACTGGGTGCGGCTATCGGTGGTGTGACAGGAGTGATTGTCGCGAAAGGGAAAGTGCAGGCTTTTATCGCCACGCTGGTGATGATGCTGTTACTGCGCGGTGTGACCCGTGTGTATACCGACGGCAGCCCGATCAGCACCGGATTCAGTGATAACGCCGATGTGTTCAGCTGGTTTGGTATCGGCCGTCTGTTTGGTATTCCGGCACCGGTCTGGCTGATGATTGTCGTTTTCGCGGCGGCCTGGTATCTGCTGCATCACACCCGTCTGGGCCGTTATATCTATGCGCTGGGCGGTAATGAATCCGCAACCCGCCTGTCCGGTATTAATGTCGATAAAATTAAAATCATTGTTTACGCTCTCTGTGGTCTGCTGGCGGCATTAGCCAGTGTGATTGAAGTGGCGCGTTTATCGTCCGCACAGCCGATGGCCGGTAACGGTTATGAGCTGGATGCAATTGCGGCGGTGGTACTCGGCGGCACCAGTCTCGCCGGGGGTAAAGGCCGTATTATGGGCACCCTGATCGGGGCGCTGATTTTAGGTTTTCTGAACAACGCGCTGAATCTGCTGGGGATCTCCTCCAACTACCAGATGATTGTTAAAGCGGTTGTGATTTTGCTGGCTGTACTCGTTGATAACAAAAGCAGTAAATAATCCACTTACCCGAATCCTGCAAGGAACAGAAACATGAAACTGAAAAAGAT