COG1172


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1172, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 38 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG1172 is associated with 38 different proteins (see tab "Protein list" and "Profile")
The 38 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2501 FBDBKF_01845 56218 57168 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S1
1 group_2502 FBDBKF_01850 57165 58160 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S1
2 group_2518 FBDBKF_02180 124812 125816 -1 lsrD autoinducer 2 ABC transporter permease LsrD Morganella morganii S1
3 group_2519 FBDBKF_02185 125813 126817 -1 lsrC autoinducer 2 ABC transporter permease LsrC Morganella morganii S1
4 group_898 FBDBKF_04705 143779 144819 1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S1
5 group_2055 FBDBKF_15405 6151 7122 -1 rbsC ribose ABC transporter permease Morganella morganii S1
6 group_2501 EHELCC_02315 444038 444988 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S2
7 group_2502 EHELCC_02320 444985 445980 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S2
8 group_2518 EHELCC_02650 512632 513636 -1 lsrD autoinducer 2 ABC transporter permease LsrD Morganella morganii S2
9 group_2519 EHELCC_02655 513633 514637 -1 lsrC autoinducer 2 ABC transporter permease LsrC Morganella morganii S2
10 group_898 EHELCC_05995 203236 204276 1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S2
11 group_2055 EHELCC_15765 5451 6422 -1 rbsC ribose ABC transporter permease Morganella morganii S2
12 group_2519 NLDBIP_00805 165499 166503 1 lsrC autoinducer 2 ABC transporter permease LsrC Morganella morganii S4
13 group_2518 NLDBIP_00810 166500 167504 1 lsrD autoinducer 2 ABC transporter permease LsrD Morganella morganii S4
14 group_2502 NLDBIP_01140 234156 235151 1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S4
15 group_2501 NLDBIP_01145 235148 236098 1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S4
16 group_898 NLDBIP_06315 244301 245341 1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S4
17 group_2055 NLDBIP_16605 74241 75212 1 rbsC ribose ABC transporter permease Morganella morganii S4
18 group_2501 LHKJJB_00890 156587 157537 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S3
19 group_2502 LHKJJB_00895 157534 158529 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S3
20 group_2518 LHKJJB_01225 225181 226185 -1 lsrD autoinducer 2 ABC transporter permease LsrD Morganella morganii S3
21 group_2519 LHKJJB_01230 226182 227186 -1 lsrC autoinducer 2 ABC transporter permease LsrC Morganella morganii S3
22 group_898 LHKJJB_03195 221825 222865 1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S3
23 group_2055 LHKJJB_16200 5451 6422 -1 rbsC ribose ABC transporter permease Morganella morganii S3
24 group_2501 HKOGLL_00930 162098 163048 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S5
25 group_2502 HKOGLL_00935 163045 164040 -1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S5
26 group_2518 HKOGLL_01265 230692 231696 -1 lsrD autoinducer 2 ABC transporter permease LsrD Morganella morganii S5
27 group_2519 HKOGLL_01270 231693 232697 -1 lsrC autoinducer 2 ABC transporter permease LsrC Morganella morganii S5
28 group_898 HKOGLL_06670 143689 144729 1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component Morganella morganii S5
29 group_2055 HKOGLL_15970 5451 6422 -1 rbsC ribose ABC transporter permease Morganella morganii S5
30 group_2501 F4V73_RS04190 886062 887009 -1 ABC transporter permease Morganella psychrotolerans
31 group_2502 F4V73_RS04195 887009 888004 -1 ABC transporter permease Morganella psychrotolerans
32 group_2518 F4V73_RS04550 961473 962468 -1 lsrD autoinducer 2 ABC transporter permease LsrD Morganella psychrotolerans
33 group_2519 F4V73_RS04555 962474 963478 -1 lsrC autoinducer 2 ABC transporter permease LsrC Morganella psychrotolerans
34 group_898 F4V73_RS09125 1908937 1909977 1 ABC transporter permease Morganella psychrotolerans
35 group_898 F4V73_RS09180 1922532 1923572 1 ABC transporter permease Morganella psychrotolerans
36 group_2055 F4V73_RS17740 189966 190937 1 rbsC ribose ABC transporter permease Morganella psychrotolerans
37 group_2055 PMI_RS00435 117327 118292 -1 rbsC ribose ABC transporter permease Proteus mirabilis HI4320