Homologs in group_2055

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15405 FBDBKF_15405 92.2 Morganella morganii S1 rbsC ribose ABC transporter permease
EHELCC_15765 EHELCC_15765 92.2 Morganella morganii S2 rbsC ribose ABC transporter permease
NLDBIP_16605 NLDBIP_16605 92.2 Morganella morganii S4 rbsC ribose ABC transporter permease
LHKJJB_16200 LHKJJB_16200 92.2 Morganella morganii S3 rbsC ribose ABC transporter permease
HKOGLL_15970 HKOGLL_15970 92.2 Morganella morganii S5 rbsC ribose ABC transporter permease
F4V73_RS17740 F4V73_RS17740 90.0 Morganella psychrotolerans rbsC ribose ABC transporter permease

Distribution of the homologs in the orthogroup group_2055

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2055

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGI1 0.0 514 84 1 321 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 0.0 514 84 1 321 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 0.0 514 84 1 321 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P44736 2.65e-137 394 68 0 303 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36948 3.24e-102 305 50 3 322 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P32720 3.32e-57 190 39 6 320 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
P77315 1.04e-52 179 36 3 324 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
P0AE27 1.05e-52 179 37 4 317 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 1.05e-52 179 37 4 317 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
P44885 7.48e-47 164 35 6 301 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q1JUP6 5.23e-44 156 35 4 318 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
P0AGI7 6.96e-42 152 34 7 356 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 6.96e-42 152 34 7 356 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 6.96e-42 152 34 7 356 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 6.96e-42 152 34 7 356 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P37772 1.08e-41 150 38 5 290 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q9F9B1 4.9e-39 144 34 5 304 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
Q2PBL9 1.74e-38 142 32 4 304 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
P55569 2.49e-38 141 34 3 294 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q8G846 4.06e-38 141 33 2 310 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
Q7N2D8 1.86e-37 139 32 4 304 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBM2 1.92e-37 139 33 4 304 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
P45045 1.08e-36 138 36 10 347 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8G845 1.17e-36 137 32 5 330 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
Q66EZ0 5.56e-35 133 32 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 5.56e-35 133 32 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1JLQ1 1.76e-34 132 31 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A7FMJ8 5.3e-34 130 31 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P39328 1.27e-33 129 37 2 274 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
A4TQL6 1.28e-33 129 31 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 1.28e-33 129 31 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 1.28e-33 129 31 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 1.28e-33 129 31 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 1.28e-33 129 31 3 303 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
Q57321 3.86e-33 131 32 7 328 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
Q56036 4.35e-33 127 35 4 323 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P23200 1.06e-30 121 34 4 323 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
A1JJ54 2.96e-29 118 31 3 283 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A1JJ53 4.78e-26 108 30 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q5PJE5 8.08e-26 108 28 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKQ2 1.11e-25 107 28 4 300 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 1.11e-25 107 28 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 1.11e-25 107 28 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
Q8Z2X7 5.22e-25 105 27 4 300 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q4J711 3.05e-24 104 30 8 287 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
A7FMJ9 5.82e-24 103 28 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JLQ2 6.98e-24 102 28 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 6.98e-24 102 28 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F9 8.8e-24 102 28 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q2PBM1 1.28e-23 102 30 1 260 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
A4TQL7 1.84e-23 101 27 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 1.84e-23 101 27 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 1.84e-23 101 27 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 1.84e-23 101 27 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 1.84e-23 101 27 1 259 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
Q8Z2X6 8.4e-22 97 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
Q57HE2 1.3e-21 97 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
A9MZG2 1.43e-21 96 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8ZKQ3 1.51e-21 96 29 3 305 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 1.51e-21 96 29 3 305 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B1IRU6 2.26e-21 96 31 2 286 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 2.26e-21 96 31 2 286 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
B1LFA1 5.47e-21 95 30 2 286 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
A4WER3 7.24e-21 94 31 3 278 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
B1LFA0 9.69e-21 94 30 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
P0AFS2 1.01e-20 94 30 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 1.01e-20 94 30 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 1.01e-20 94 30 3 285 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 1.01e-20 94 30 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 1.01e-20 94 30 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 1.01e-20 94 30 3 285 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
Q8XAY8 1.21e-20 94 30 2 286 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
P77672 1.37e-20 94 30 2 286 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 1.37e-20 94 30 2 286 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q8X504 1.4e-20 93 30 3 282 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
Q0T4L8 3.41e-20 92 30 2 286 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
A6TEB7 3.56e-20 92 33 5 283 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q83RD8 5.43e-20 92 30 2 286 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
A4WER2 1.18e-19 91 28 2 248 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
A6TEB6 7.91e-19 89 28 1 282 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q7N2D7 4.53e-18 86 28 1 260 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBL8 5.15e-18 86 27 1 260 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00435
Feature type CDS
Gene rbsC
Product ribose ABC transporter permease
Location 117327 - 118292 (strand: -1)
Length 966 (nucleotides) / 321 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2055
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10440 ribose transport system permease protein ABC transporters -

Protein Sequence

MSTKSIPASKRWFSKAWLLEQKSLIALLLLIVVVSTLSPNFFTLNNIFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASMVGADVNALVAVVGALALGAAIGGVTGVIIAKGKVQAFIATLVMMLLLRGVTRVYTDGSPINTGFSDNADLFSWFGIGRPFGIPTPIWLMMIVFLSAWYVLHHTRLGRYIYALGGNEAATRLSGISVDKIKIIVYALCGLLAALASVIEVARLSSAQPMAGNGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNALNLLGISSNYQMIVKAVVILLAVLVDNKK

Flanking regions ( +/- flanking 50bp)

AATGGCGGCGGCTGTTGGTAAACAATATGGTGCTACAGTAGGAGTTTGAGATGAGTACAAAATCAATACCAGCGTCAAAACGATGGTTCTCTAAGGCTTGGTTATTAGAACAAAAATCACTCATTGCCTTATTGTTGCTTATTGTCGTGGTTTCAACACTCAGCCCGAATTTTTTTACCTTAAATAATATTTTTAACATTCTACAACAAACCTCTGTTAACGCAATTATGGCTGTAGGTATGACATTAGTCATTTTAACCTCTGGTATCGATTTATCGGTAGGTTCATTACTCGCTTTAACCGGTGCTGTTGCTGCTTCTATGGTAGGGGCTGATGTTAATGCGTTAGTGGCTGTTGTCGGTGCTTTAGCATTAGGAGCAGCTATTGGTGGCGTTACAGGTGTCATTATCGCTAAAGGTAAAGTGCAGGCATTTATTGCCACATTAGTGATGATGCTGTTATTGCGTGGTGTCACGCGTGTTTATACTGATGGCAGTCCAATAAATACAGGATTTAGCGATAATGCCGACCTGTTTAGCTGGTTTGGTATTGGACGCCCCTTTGGGATCCCCACCCCTATTTGGCTGATGATGATTGTCTTTTTAAGCGCGTGGTATGTATTGCATCACACACGCTTGGGTCGCTATATCTATGCCCTTGGAGGAAACGAAGCAGCAACCCGTTTATCTGGTATTAGTGTCGATAAAATCAAAATTATTGTTTATGCGCTTTGCGGTTTATTAGCGGCCCTTGCCAGTGTCATTGAAGTTGCTCGTCTTTCTTCCGCCCAACCAATGGCTGGCAATGGTTATGAACTGGATGCTATCGCCGCTGTCGTCTTAGGTGGTACCAGTCTTGCTGGCGGTAAAGGACGCATAATGGGCACACTTATTGGTGCGTTAATTTTAGGCTTTCTCAATAATGCACTCAATTTATTAGGCATATCATCCAATTATCAAATGATAGTCAAAGCTGTTGTCATCTTACTTGCCGTGCTGGTTGATAACAAAAAATAATACGCTTTCTCTTAATCCGAACCCCGACAGGAATATATTATGAAACTAAA