Homologs in group_1962

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14700 FBDBKF_14700 100.0 Morganella morganii S1 pabC aminodeoxychorismate lyase
EHELCC_15505 EHELCC_15505 100.0 Morganella morganii S2 pabC aminodeoxychorismate lyase
LHKJJB_15805 LHKJJB_15805 100.0 Morganella morganii S3 pabC aminodeoxychorismate lyase
HKOGLL_14925 HKOGLL_14925 100.0 Morganella morganii S5 pabC aminodeoxychorismate lyase
F4V73_RS07495 F4V73_RS07495 74.2 Morganella psychrotolerans pabC aminodeoxychorismate lyase
PMI_RS04240 PMI_RS04240 45.1 Proteus mirabilis HI4320 pabC aminodeoxychorismate lyase

Distribution of the homologs in the orthogroup group_1962

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1962

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28305 3.68e-73 228 44 2 269 1 pabC Aminodeoxychorismate lyase Escherichia coli (strain K12)
Q56693 5.62e-46 158 35 1 248 3 pabC Aminodeoxychorismate lyase Vibrio harveyi
Q9KQI0 5.42e-40 142 34 1 246 3 pabC Aminodeoxychorismate lyase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P28821 7.85e-14 73 24 5 245 3 pabC Aminodeoxychorismate lyase Bacillus subtilis (strain 168)
P54692 4.13e-13 71 27 7 240 3 dat D-alanine aminotransferase Bacillus licheniformis
O07597 1.85e-11 66 23 4 242 3 dat D-alanine aminotransferase Bacillus subtilis (strain 168)
O29329 2.3e-11 66 25 8 249 1 ilvE Putative branched-chain-amino-acid aminotransferase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q8CS41 1.1e-10 64 23 7 259 3 dat D-alanine aminotransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNG0 1.1e-10 64 23 7 259 3 dat D-alanine aminotransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q92B90 3.45e-10 62 27 8 246 3 dat D-alanine aminotransferase Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
G2JZ74 3.09e-09 60 27 8 244 3 dat D-alanine aminotransferase Listeria monocytogenes serotype 1/2a (strain 10403S)
P0DJL9 3.39e-09 60 27 8 244 3 dat D-alanine aminotransferase Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q71Z49 8.2e-09 58 27 8 245 3 dat D-alanine aminotransferase Listeria monocytogenes serotype 4b (strain F2365)
Q6G8H7 8.95e-09 58 24 6 240 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MSSA476)
Q9ASR4 9.06e-09 59 22 7 262 2 At5g27410 Branched-chain-amino-acid aminotransferase-like protein 2 Arabidopsis thaliana
Q5HF24 2.33e-08 57 23 6 240 3 dat D-alanine aminotransferase Staphylococcus aureus (strain COL)
P99090 2.44e-08 57 23 6 240 1 dat D-alanine aminotransferase Staphylococcus aureus (strain N315)
P63511 2.44e-08 57 23 6 240 3 dat D-alanine aminotransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8NW24 3.17e-08 57 23 6 240 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MW2)
Q6GFV1 3.17e-08 57 23 6 240 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MRSA252)
Q58414 3.2e-08 57 24 8 246 3 ilvE Putative branched-chain-amino-acid aminotransferase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P54694 1.94e-07 54 23 8 253 3 dat D-alanine aminotransferase Staphylococcus haemolyticus
P19938 1.12e-06 52 22 3 240 1 dat D-alanine aminotransferase Bacillus sp. (strain YM-1)
Q8W0Z7 2.57e-06 52 22 7 258 2 At3g05190 Branched-chain-amino-acid aminotransferase-like protein 1 Arabidopsis thaliana
P54693 4.09e-06 50 25 5 242 3 dat D-alanine aminotransferase Lysinibacillus sphaericus
Q8L493 4.14e-06 51 26 9 246 1 DAAT D-amino-acid transaminase, chloroplastic Arabidopsis thaliana
Q79FW0 0.000112 46 22 6 215 1 Rv0812 Bifunctional aminodeoxychorismate lyase / D-amino acid transaminase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O27481 0.000119 46 22 10 271 3 ilvE Putative branched-chain-amino-acid aminotransferase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P0A1A5 0.000205 45 26 0 105 1 ilvE Branched-chain-amino-acid aminotransferase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1A6 0.000205 45 26 0 105 3 ilvE Branched-chain-amino-acid aminotransferase Salmonella typhi
P0AB80 0.000237 45 26 0 105 1 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli (strain K12)
P0AB81 0.000237 45 26 0 105 3 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AB82 0.000237 45 26 0 105 3 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli O157:H7
Q4ULR3 0.000423 44 20 10 244 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
O05970 0.000649 44 19 7 256 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia prowazekii (strain Madrid E)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_16035
Feature type CDS
Gene pabC
Product aminodeoxychorismate lyase
Location 68147 - 68986 (strand: -1)
Length 840 (nucleotides) / 279 (amino acids)

Contig

Accession ZDB_532
Length 116685 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1962
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01063 Amino-transferase class IV

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0115 Amino acid transport and metabolism (E)
Coenzyme transport and metabolism (H)		 EH Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] Folate biosynthesis
Biosynthesis of cofactors		 -

Protein Sequence

MTQQTHYWVNGVPQHTIAISDRSVQFGDGCFTTMRIVNSKPSLLSRHLHRLRSGCAGLGLTPPDDALLTQWIMQAAEGTADGVLKVIVSAGEQGRGYLRADVPPLVILIRSAYPESYPALQERGLSVVKSPVPLSVNPYLAGIKHLNRLEQVLIRRYTAEQQADEAIVCDTDGILTEGCSANLFWRCGDDVFTPSLSKCGVAGVMRAHIMDVLKGSRYRCYETERFPQVLAKADEVIMCNALMPVMPVNDIRADARHHWHYTSRSLFTWLLPHCPAAIP

Flanking regions ( +/- flanking 50bp)

CGCATACTGAATGACGGTTAAATAATAACCGTCAAAACAATGAGTTGGCTATGACACAACAGACGCATTACTGGGTTAATGGTGTACCGCAGCACACCATCGCGATTTCTGATCGCAGTGTGCAGTTTGGTGACGGCTGTTTTACCACGATGCGCATTGTGAACAGCAAACCGTCGCTGCTTTCACGTCACCTGCACCGGCTCCGCAGCGGTTGTGCCGGGCTGGGGCTGACACCGCCGGATGACGCGCTGCTGACCCAGTGGATAATGCAGGCCGCAGAGGGTACAGCGGATGGTGTGCTGAAAGTGATTGTTTCCGCCGGTGAGCAGGGACGCGGTTATCTGCGTGCGGATGTACCGCCGCTGGTGATCCTGATCCGCTCCGCATATCCGGAAAGCTATCCGGCATTGCAGGAGCGCGGGTTATCGGTGGTGAAAAGCCCGGTGCCGTTGTCGGTCAATCCGTATCTGGCTGGTATCAAACACCTGAACCGGCTGGAGCAGGTGCTGATCCGCCGTTATACGGCAGAACAGCAGGCTGATGAAGCCATTGTCTGTGATACTGACGGCATTCTGACCGAAGGTTGCAGCGCCAATCTGTTCTGGCGCTGCGGCGATGATGTGTTTACCCCGTCACTGAGCAAATGTGGTGTGGCCGGTGTGATGCGCGCGCATATCATGGATGTGCTGAAAGGCAGCCGTTACCGCTGTTATGAAACCGAACGTTTTCCGCAGGTGCTGGCAAAAGCGGATGAAGTGATTATGTGCAACGCGCTGATGCCGGTCATGCCGGTCAATGATATCCGTGCGGATGCCCGTCATCACTGGCATTATACCTCCCGCTCACTCTTTACCTGGCTTTTGCCGCATTGTCCGGCAGCAATACCCTGAATTAACAGAGTTAATGACTGATGAAAAAAACACGGATTTTCCTTGTGACA