Orthogroup:group_1962


Homologs in group_1962

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14700 FBDBKF_14700 Morganella morganii S1 pabC aminodeoxychorismate lyase
EHELCC_15505 EHELCC_15505 Morganella morganii S2 pabC aminodeoxychorismate lyase
NLDBIP_16035 NLDBIP_16035 Morganella morganii S4 pabC aminodeoxychorismate lyase
LHKJJB_15805 LHKJJB_15805 Morganella morganii S3 pabC aminodeoxychorismate lyase
HKOGLL_14925 HKOGLL_14925 Morganella morganii S5 pabC aminodeoxychorismate lyase
F4V73_RS07495 F4V73_RS07495 Morganella psychrotolerans pabC aminodeoxychorismate lyase
PMI_RS04240 PMI_RS04240 Proteus mirabilis HI4320 pabC aminodeoxychorismate lyase

Distribution of group_1962 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1962 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1962

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1962.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pabC 7

Product

# Product Occurence
1 aminodeoxychorismate lyase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0115 7 EH Amino acid transport and metabolism (E)
Coenzyme transport and metabolism (H)		 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02619 7 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] Folate biosynthesis
Biosynthesis of cofactors		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01063 7 Amino-transferase class IV

Annotations of the 50 SwissProt hits

Annotation Number of occurrences
Aminodeoxychorismate lyase 4
Bifunctional aminodeoxychorismate lyase / D-amino acid transaminase 1
Branched-chain amino acid aminotransferase 2, chloroplastic 1
Branched-chain-amino-acid aminotransferase 6
Branched-chain-amino-acid aminotransferase 1, mitochondrial 1
Branched-chain-amino-acid aminotransferase 2, chloroplastic 1
Branched-chain-amino-acid aminotransferase 3, chloroplastic 1
Branched-chain-amino-acid aminotransferase 5, chloroplastic 1
Branched-chain-amino-acid aminotransferase 6 1
Branched-chain-amino-acid aminotransferase-like protein 1 1
Branched-chain-amino-acid aminotransferase-like protein 2 1
D-alanine aminotransferase 17
D-amino-acid transaminase, chloroplastic 1
Methionine aminotransferase BCAT4 1
Probable branched-chain-amino-acid aminotransferase 8
Putative branched-chain-amino-acid aminotransferase 3
Putative branched-chain-amino-acid aminotransferase 7 1

Protein length

Min length 275
Max length 279
Mean length (sd) 278.4 (1.5)
Median length 279.0

Protein length distribution