Homologs in group_2314

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17775 FBDBKF_17775 100.0 Morganella morganii S1 tatD 3'->5' ssDNA/RNA exonuclease TatD
EHELCC_09800 EHELCC_09800 100.0 Morganella morganii S2 tatD 3'->5' ssDNA/RNA exonuclease TatD
LHKJJB_07575 LHKJJB_07575 100.0 Morganella morganii S3 tatD 3'->5' ssDNA/RNA exonuclease TatD
HKOGLL_07125 HKOGLL_07125 100.0 Morganella morganii S5 tatD 3'->5' ssDNA/RNA exonuclease TatD
F4V73_RS15190 F4V73_RS15190 84.2 Morganella psychrotolerans - TatD family hydrolase
PMI_RS11965 PMI_RS11965 62.8 Proteus mirabilis HI4320 - metal-dependent hydrolase

Distribution of the homologs in the orthogroup group_2314

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2314

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39408 3.44e-95 283 55 1 259 1 yjjV Uncharacterized metal-dependent hydrolase YjjV Escherichia coli (strain K12)
P44500 1.1e-80 246 48 4 266 3 HI_0081 Uncharacterized metal-dependent hydrolase HI_0081 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P73335 1.94e-36 133 32 4 263 1 dtd3 D-aminoacyl-tRNA deacylase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P37545 1.36e-28 112 25 3 258 3 yabD Uncharacterized metal-dependent hydrolase YabD Bacillus subtilis (strain 168)
P57436 2.5e-28 112 26 5 269 3 BU355 Uncharacterized metal-dependent hydrolase BU355 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P44718 8.98e-28 110 30 7 270 3 HI_0454 Uncharacterized metal-dependent hydrolase HI_0454 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9J1 1.6e-27 109 27 6 271 3 BUsg_343 Uncharacterized metal-dependent hydrolase BUsg_343 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AG7 6.31e-27 108 26 6 270 3 bbp_325 Uncharacterized metal-dependent hydrolase bbp_325 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P0AFQ7 3.98e-25 103 28 6 269 1 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli (strain K12)
P0AFQ8 3.98e-25 103 28 6 269 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ9 3.98e-25 103 28 6 269 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O157:H7
O08343 4.34e-23 98 31 3 208 1 tatD Uncharacterized metal-dependent hydrolase TatD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
D8MKW4 6.89e-23 97 32 9 261 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia billingiae (strain Eb661)
E1SKR8 8.49e-22 94 31 7 259 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea vagans (strain C9-1)
Q6P8M1 4.36e-21 93 26 8 296 1 Tatdn1 Deoxyribonuclease TATDN1 Mus musculus
Q148G4 7.12e-21 92 26 7 270 2 TATDN1 Deoxyribonuclease TATDN1 Bos taurus
Q6P1N9 7.96e-21 92 25 9 296 1 TATDN1 Deoxyribonuclease TATDN1 Homo sapiens
Q640V9 1.05e-20 92 26 9 293 2 tatdn1 Deoxyribonuclease TATDN1 Xenopus laevis
D4ICL5 1.62e-20 90 29 7 254 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)
E6WHK1 1.86e-20 90 30 7 259 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea sp. (strain At-9b)
Q9UUF1 1.99e-20 91 27 10 282 3 pi038 Deoxyribonuclease Tat-D Schizosaccharomyces pombe (strain 972 / ATCC 24843)
B2VG45 2.05e-20 90 29 7 254 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
D0Z9R0 2.06e-19 88 33 10 257 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Edwardsiella tarda (strain EIB202)
P78005 2.35e-19 87 26 7 273 3 MPN_009 Uncharacterized metal-dependent hydrolase MPN_009 Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
D4GGR2 7.01e-19 86 29 7 254 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea ananatis (strain LMG 20103)
Q503T5 7.97e-19 86 27 9 267 2 tatdn3 Putative deoxyribonuclease tatdn3 Danio rerio
Q9L6M2 8.34e-19 86 28 7 254 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A1A4M4 2.38e-18 85 27 7 263 2 TATDN3 Putative deoxyribonuclease TATDN3 Bos taurus
Q9PRC8 2.88e-18 85 28 4 187 3 UU017 Uncharacterized metal-dependent hydrolase UU017 Ureaplasma parvum serovar 3 (strain ATCC 700970)
Q3U1C6 5.74e-18 84 27 11 276 1 Tatdn3 Putative deoxyribonuclease TATDN3 Mus musculus
Q58977 6.14e-18 84 22 8 260 3 MJ1582 Uncharacterized metal-dependent hydrolase MJ1582 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A4WFX9 1.55e-17 82 27 8 267 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter sp. (strain 638)
A8G8C4 1.22e-16 80 29 9 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Serratia proteamaculans (strain 568)
Q05AV0 1.38e-16 80 25 8 266 2 tatdn3-a Putative deoxyribonuclease tatdn3-A Xenopus laevis
P47255 1.54e-16 80 23 5 265 3 MG009 Uncharacterized metal-dependent hydrolase MG009 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q6GML7 2.41e-16 80 26 8 296 1 tatdn1 Deoxyribonuclease TATDN1 Danio rerio
B7LTZ5 2.84e-16 79 27 7 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
D2TUZ4 3.59e-16 79 29 6 211 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter rodentium (strain ICC168)
Q0SZ31 4.51e-16 79 27 7 254 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Shigella flexneri serotype 5b (strain 8401)
P27859 4.56e-16 79 27 7 254 1 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia coli (strain K12)
E3G381 9.02e-16 78 27 7 266 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter lignolyticus (strain SCF1)
B1JP69 1.1e-15 77 32 8 206 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
C4VAS3 3.27e-15 76 28 8 178 3 NCER_101798 Putative deoxyribonuclease TATDN1 homolog Vairimorpha ceranae (strain BRL01)
A8ACY8 5.68e-15 75 30 6 203 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q17R31 6.04e-15 75 27 7 263 1 TATDN3 Putative deoxyribonuclease TATDN3 Homo sapiens
E8XYF5 8.14e-15 75 28 8 258 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Rahnella sp. (strain Y9602)
B7XJI2 2.75e-14 74 24 6 212 3 EBI_25826 Putative deoxyribonuclease TATDN1 homolog Enterocytozoon bieneusi (strain H348)
B5XYH5 3.51e-14 73 32 7 204 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Klebsiella pneumoniae (strain 342)
D0KC77 4.24e-14 73 27 8 258 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium parmentieri (strain WPP163)
Q93075 1.28e-13 73 27 8 236 1 TATDN2 Putative deoxyribonuclease TATDN2 Homo sapiens
C6DI71 1.7e-13 71 27 8 257 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium carotovorum subsp. carotovorum (strain PC1)
A7MQN1 1.76e-13 71 27 7 257 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter sakazakii (strain ATCC BAA-894)
E0SLH6 6.34e-13 70 28 10 262 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Dickeya dadantii (strain 3937)
Q6DAQ1 5.66e-12 67 26 8 257 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C9XTA5 2.7e-11 65 28 7 257 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
Q6GPM3 3.06e-10 62 25 8 263 2 tatdn3-b Putative deoxyribonuclease tatdn3-B Xenopus laevis
C6C4V4 3.11e-10 62 36 5 124 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Musicola paradisiaca (strain Ech703)
Q8SW70 5.02e-10 62 25 11 232 3 ECU03_0200 Putative deoxyribonuclease TATDN1 homolog Encephalitozoon cuniculi (strain GB-M1)
P45305 5.86e-07 52 24 12 267 3 HI_1664 Uncharacterized metal-dependent hydrolase HI_1664 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q58778 0.001 43 28 3 89 3 MJ1383 Uncharacterized protein MJ1383 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_10180
Feature type CDS
Gene tatD
Product 3'->5' ssDNA/RNA exonuclease TatD
Location 196552 - 197346 (strand: -1)
Length 795 (nucleotides) / 264 (amino acids)

Contig

Accession ZDB_524
Length 215957 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2314
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01026 TatD related DNase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0084 Cell motility (N) N 3'->5' ssDNA/RNA exonuclease TatD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03424 TatD DNase family protein [EC:3.1.21.-] - -

Protein Sequence

MQFIDTHCHFDFPFFTDDLTRHKAAAAQAGLTDIIIPAVSNQNLSTVAGLCRSSGDAFPRLHAAFGLHPLYIAEHTPEHLEQLESFITASGTECVAVGEIGLDRYMAEPQWDKQLDFFIAQLKLAARTDKPVILHSRKTHDTLAAVLRRHPVPRRGVIHGFSGSFAQADAFVKLGYYIGVGGTITYDRAQKTRRAIAQLPLSALLLETDAPDMPLSGFQGEPNRPERIVRTFEVLCSLRSESPEEIAAQIYRNSCTLFSLQSSD

Flanking regions ( +/- flanking 50bp)

GGTATTACATTCACCGGAACGCTCACCGGAAAAGCCGGCGGACTGAATAAATGCAATTTATTGATACCCACTGCCATTTCGATTTCCCGTTTTTTACGGATGATCTTACCCGCCATAAAGCCGCAGCGGCACAGGCCGGGCTGACCGATATTATTATCCCGGCGGTCAGCAATCAGAACCTCAGCACGGTGGCCGGGCTGTGCCGGTCATCCGGCGATGCATTTCCCCGCCTGCACGCGGCATTTGGTCTGCATCCGCTTTATATTGCCGAACACACCCCTGAACATCTGGAACAGCTTGAGTCGTTTATCACCGCAAGCGGGACAGAATGCGTGGCGGTGGGGGAAATCGGGTTGGATCGCTATATGGCGGAGCCGCAGTGGGATAAGCAGCTGGATTTTTTTATTGCTCAACTGAAACTGGCCGCACGGACAGATAAACCGGTTATTCTGCACTCCCGCAAAACCCATGACACGCTCGCTGCTGTTCTGCGCCGTCACCCGGTGCCCCGCCGTGGTGTGATTCACGGATTTTCAGGCAGTTTTGCCCAGGCGGATGCCTTTGTGAAGCTGGGTTATTACATCGGGGTCGGCGGGACGATTACTTACGACCGGGCTCAGAAGACCCGGCGGGCAATCGCGCAGCTCCCGCTCTCTGCGTTACTGCTGGAAACGGATGCCCCGGATATGCCGCTCAGCGGTTTTCAGGGTGAACCGAACCGGCCGGAGCGGATTGTCCGTACATTTGAAGTGCTCTGTTCACTGCGCAGTGAGTCTCCGGAAGAGATTGCTGCTCAGATTTATCGCAACAGCTGTACACTTTTTTCGCTGCAATCATCTGATTAAGATTCCTGAATCGATTTTCCCGCGATTTTGTCCTGTTAAAGCCTGCATTT