COG0084


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0084, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 3'->5' ssDNA/RNA exonuclease TatD
Function(s) descr. Cell motility (N)

Occurence in the database

COG0084 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1958 FBDBKF_14680 34605 35384 -1 tatD metal-dependent hydrolase Morganella morganii S1
1 group_2314 FBDBKF_17775 17120 17914 -1 tatD 3'->5' ssDNA/RNA exonuclease TatD Morganella morganii S1
2 group_2314 EHELCC_09800 196552 197346 -1 tatD 3'->5' ssDNA/RNA exonuclease TatD Morganella morganii S2
3 group_1958 EHELCC_15485 64681 65460 -1 tatD metal-dependent hydrolase Morganella morganii S2
4 group_2314 NLDBIP_10180 196552 197346 -1 tatD 3'->5' ssDNA/RNA exonuclease TatD Morganella morganii S4
5 group_1958 NLDBIP_16015 64681 65460 -1 tatD metal-dependent hydrolase Morganella morganii S4
6 group_2314 LHKJJB_07575 19892 20686 1 tatD 3'->5' ssDNA/RNA exonuclease TatD Morganella morganii S3
7 group_1958 LHKJJB_15825 51226 52005 1 tatD metal-dependent hydrolase Morganella morganii S3
8 group_2314 HKOGLL_07125 19892 20686 1 tatD 3'->5' ssDNA/RNA exonuclease TatD Morganella morganii S5
9 group_1958 HKOGLL_14945 50438 51217 1 tatD metal-dependent hydrolase Morganella morganii S5
10 group_1958 F4V73_RS07475 1563240 1564019 -1 metal-dependent hydrolase Morganella psychrotolerans
11 group_2314 F4V73_RS15190 17318 18100 1 TatD family hydrolase Morganella psychrotolerans
12 group_1958 PMI_RS04260 957327 958112 1 metal-dependent hydrolase Proteus mirabilis HI4320
13 group_2314 PMI_RS11965 2646806 2647588 -1 metal-dependent hydrolase Proteus mirabilis HI4320