Homologs in group_2178

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16395 FBDBKF_16395 100.0 Morganella morganii S1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
EHELCC_08260 EHELCC_08260 100.0 Morganella morganii S2 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
LHKJJB_05680 LHKJJB_05680 100.0 Morganella morganii S3 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
HKOGLL_05235 HKOGLL_05235 100.0 Morganella morganii S5 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
F4V73_RS02920 F4V73_RS02920 82.5 Morganella psychrotolerans - N-acetylmuramoyl-L-alanine amidase
PMI_RS07810 PMI_RS07810 49.2 Proteus mirabilis HI4320 - N-acetylmuramoyl-L-alanine amidase

Distribution of the homologs in the orthogroup group_2178

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2178

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75820 8.87e-76 234 46 4 263 1 amiD N-acetylmuramoyl-L-alanine amidase AmiD Escherichia coli (strain K12)
P82973 5.07e-18 82 42 2 103 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Enterobacter cloacae
P82974 9.17e-14 71 36 2 103 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Citrobacter freundii
E1W818 1.16e-13 70 36 2 103 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain SL1344)
P13016 2.85e-13 69 36 2 103 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Escherichia coli (strain K12)
P0CL03 4.28e-13 69 35 2 103 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q92IC3 2.82e-12 68 27 10 216 3 RC0497 Putative N-acetylmuramoyl-L-alanine amidase RC0497 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P44624 8.36e-11 63 33 4 109 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_08585
Feature type CDS
Gene ampD
Product N-acetyl-anhydromuramyl-L-alanine amidase AmpD
Location 120536 - 121363 (strand: 1)
Length 828 (nucleotides) / 275 (amino acids)

Contig

Accession ZDB_523
Length 257158 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2178
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01471 Putative peptidoglycan binding domain
PF01510 N-acetylmuramoyl-L-alanine amidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3023 Cell wall/membrane/envelope biogenesis (M) M N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11066 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] - -

Protein Sequence

MWRSVCLVCALILTGCSNQSQYIDRGEYIVDQRSIKEPWLSKPNNYLVFHYTALNDEASLRVLTAGGVSVQYLVPTIPAVRDGKPVVLQLVPEGNEAWHAGKSHWRGESSLNKSSIGVEIVNPGTVKMSVGQRWVPYQTAQIDLIVKLAQDVIARHNIAPQNVVGHSDIAPQRKLDPGPMFPWEYLAKRGVGAWPDASDVKRFLGNRHPSDKISVGELQQALKKYGYEIPLTGKADGKTRNVIKAFQMHFRSHKVNGEADAETLALVKALLKKYN

Flanking regions ( +/- flanking 50bp)

AGGGGCTGTACCGGCATTGTGCCGGATAACATTGTACAGGACAAAGAAAGATGTGGCGTAGTGTGTGTCTGGTGTGTGCGCTGATACTGACAGGATGCAGTAATCAGAGCCAGTATATTGATCGCGGTGAGTATATTGTTGATCAGCGAAGTATCAAAGAGCCGTGGCTATCCAAACCGAATAATTATCTGGTTTTCCATTATACCGCACTAAATGATGAGGCATCGCTGCGTGTGCTGACTGCCGGCGGGGTGAGTGTTCAGTATCTGGTGCCGACAATCCCTGCGGTACGTGACGGTAAACCGGTGGTATTGCAGTTGGTGCCGGAGGGCAATGAAGCCTGGCATGCGGGGAAAAGTCACTGGCGCGGGGAAAGCAGCCTGAATAAAAGCTCGATCGGCGTGGAAATTGTCAATCCGGGCACAGTGAAAATGTCTGTCGGGCAGCGCTGGGTGCCGTATCAGACCGCACAGATAGACCTGATTGTAAAACTGGCACAGGATGTGATAGCGCGGCATAACATTGCCCCGCAGAATGTGGTGGGGCACAGTGATATCGCGCCGCAGCGCAAACTGGACCCGGGCCCGATGTTCCCGTGGGAATATCTGGCAAAACGCGGGGTCGGCGCCTGGCCGGATGCTTCTGATGTGAAACGTTTTCTCGGTAACCGGCATCCGTCGGATAAAATCAGTGTCGGTGAATTACAGCAGGCACTGAAAAAATACGGCTATGAGATTCCGCTGACCGGTAAGGCTGACGGGAAAACCCGCAATGTGATTAAAGCGTTCCAGATGCATTTCCGCTCTCACAAGGTGAACGGGGAAGCGGATGCGGAAACCCTGGCACTGGTGAAAGCATTGCTGAAGAAATATAACTGACAACGTATCAGCGGCAGGAATAAAAAAGCCCGGTCAGATAACCGGGCTTT