Orthogroup:group_2178


Homologs in group_2178

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16395 FBDBKF_16395 Morganella morganii S1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
EHELCC_08260 EHELCC_08260 Morganella morganii S2 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
NLDBIP_08585 NLDBIP_08585 Morganella morganii S4 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
LHKJJB_05680 LHKJJB_05680 Morganella morganii S3 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
HKOGLL_05235 HKOGLL_05235 Morganella morganii S5 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
F4V73_RS02920 F4V73_RS02920 Morganella psychrotolerans - N-acetylmuramoyl-L-alanine amidase
PMI_RS07810 PMI_RS07810 Proteus mirabilis HI4320 - N-acetylmuramoyl-L-alanine amidase

Distribution of group_2178 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2178 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2178

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2178.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ampD 5
2 - 2

Product

# Product Occurence
1 N-acetyl-anhydromuramyl-L-alanine amidase AmpD 5
2 N-acetylmuramoyl-L-alanine amidase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3023 7 M Cell wall/membrane/envelope biogenesis (M) N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01447 1 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] - -
K11066 6 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01471 7 Putative peptidoglycan binding domain
PF01510 7 N-acetylmuramoyl-L-alanine amidase

Annotations of the 8 SwissProt hits

Annotation Number of occurrences
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 6
N-acetylmuramoyl-L-alanine amidase AmiD 1
Putative N-acetylmuramoyl-L-alanine amidase RC0497 1

Protein length

Min length 275
Max length 294
Mean length (sd) 278.0 (7.1)
Median length 275.0

Protein length distribution