Homologs in group_2178

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16395 FBDBKF_16395 49.2 Morganella morganii S1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
EHELCC_08260 EHELCC_08260 49.2 Morganella morganii S2 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
NLDBIP_08585 NLDBIP_08585 49.2 Morganella morganii S4 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
LHKJJB_05680 LHKJJB_05680 49.2 Morganella morganii S3 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
HKOGLL_05235 HKOGLL_05235 49.2 Morganella morganii S5 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
F4V73_RS02920 F4V73_RS02920 47.8 Morganella psychrotolerans - N-acetylmuramoyl-L-alanine amidase

Distribution of the homologs in the orthogroup group_2178

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2178

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75820 5.44e-81 249 47 1 259 1 amiD N-acetylmuramoyl-L-alanine amidase AmiD Escherichia coli (strain K12)
P82973 1.47e-16 79 43 2 100 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Enterobacter cloacae
P13016 2.6e-16 78 41 4 120 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Escherichia coli (strain K12)
P82974 7.55e-16 77 41 4 119 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Citrobacter freundii
E1W818 2.31e-14 73 40 4 117 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain SL1344)
P0CL03 8.97e-14 71 38 4 120 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P44624 4.62e-12 66 30 11 198 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q92IC3 6.58e-12 67 26 9 214 3 RC0497 Putative N-acetylmuramoyl-L-alanine amidase RC0497 Rickettsia conorii (strain ATCC VR-613 / Malish 7)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07810
Feature type CDS
Gene -
Product N-acetylmuramoyl-L-alanine amidase
Location 1710032 - 1710916 (strand: -1)
Length 885 (nucleotides) / 294 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2178
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01471 Putative peptidoglycan binding domain
PF01510 N-acetylmuramoyl-L-alanine amidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3023 Cell wall/membrane/envelope biogenesis (M) M N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11066 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] - -

Protein Sequence

MIFSRYSLFLLVTLGLLSGCVQQPQLIDRGDYFAQVVPNNPGQDNRVKFLVMHYTAVDDKESLKTLTSGNVSSHYLIPTKPNYVDGKPVVFALVSEDKRAWHAGLSQWGNSAGLNDGSIGIEIVNYGYNDQGTLREWLPYTAEQLSTITMMMKDIIQRYGIEPQNVVGHSDIAPQRKVDPGPLFPWAELAKQGIGAWPDDETVTFYLAGRAASEPVDIANFQTLLAKYGYQTPTTGILDPETQKVVSAFQMHFRPSDIKGIPDAQSEAILMALIDKYRTKWIQPSTEPIKHSDN

Flanking regions ( +/- flanking 50bp)

TGTCTACAATTTAGCCTTAAATTTATAGTCTAATGTATTCAGGATGGATAATGATCTTTAGTCGCTACAGTCTCTTTTTACTTGTTACTTTGGGGTTGCTTTCAGGTTGTGTTCAGCAACCTCAGCTTATTGATAGGGGGGATTATTTTGCACAAGTTGTTCCCAATAATCCTGGGCAAGATAATCGCGTAAAATTTTTAGTTATGCACTACACCGCCGTTGACGATAAAGAATCGTTAAAAACGTTAACTTCGGGAAATGTAAGCAGTCATTATTTAATTCCTACCAAACCAAATTATGTTGATGGTAAGCCGGTTGTGTTTGCTTTAGTGAGTGAAGATAAAAGAGCATGGCATGCAGGGCTAAGTCAGTGGGGAAATAGTGCAGGTTTGAATGATGGTTCAATTGGTATTGAGATAGTGAATTATGGTTATAACGATCAGGGTACATTAAGAGAGTGGTTACCTTATACCGCAGAACAACTCTCAACCATTACTATGATGATGAAAGATATTATTCAACGCTATGGTATTGAACCACAAAATGTAGTCGGGCATAGTGATATTGCACCACAACGCAAAGTTGATCCAGGGCCACTTTTCCCATGGGCTGAATTAGCGAAACAAGGAATAGGCGCTTGGCCAGATGATGAAACAGTTACTTTCTATTTAGCGGGAAGAGCTGCATCGGAGCCTGTTGATATTGCTAATTTTCAAACCTTGTTAGCGAAGTATGGTTATCAAACACCAACAACAGGGATATTAGATCCTGAAACGCAAAAAGTGGTTAGCGCATTTCAAATGCATTTTAGACCAAGTGATATTAAAGGTATTCCTGATGCGCAGTCAGAAGCTATTTTAATGGCGTTAATTGATAAATATCGAACTAAGTGGATACAGCCATCAACTGAGCCAATAAAACATTCAGATAATTGATCGTTATTAAGGATAAAAACTAGCCCCAAAGTGACCATTTACTTTGGGGC