Homologs in group_546

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01300 FBDBKF_01300 100.0 Morganella morganii S1 tssE type VI secretion system baseplate subunit TssE
EHELCC_00245 EHELCC_00245 100.0 Morganella morganii S2 tssE type VI secretion system baseplate subunit TssE
LHKJJB_04730 LHKJJB_04730 100.0 Morganella morganii S3 tssE type VI secretion system baseplate subunit TssE
HKOGLL_02315 HKOGLL_02315 100.0 Morganella morganii S5 tssE type VI secretion system baseplate subunit TssE
F4V73_RS02370 F4V73_RS02370 82.8 Morganella psychrotolerans tssE type VI secretion system baseplate subunit TssE
PMI_RS03675 PMI_RS03675 49.7 Proteus mirabilis HI4320 tssE type VI secretion system baseplate subunit TssE

Distribution of the homologs in the orthogroup group_546

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_546

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_03215
Feature type CDS
Gene tssE
Product type VI secretion system baseplate subunit TssE
Location 622403 - 622840 (strand: 1)
Length 438 (nucleotides) / 145 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_546
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04965 Baseplate wedge protein gp25

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3518 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11905 type VI secretion system protein - -

Protein Sequence

MGAYYHRQSSQPVRLFERIRGKHAGASRQSRTAALINSVKSHLTLVLNTRPETCQSSRDLGVTDLNDATATAVDFRASLETSIRECILRYEPRISDVAVEGVIDEHNPLLLEFRITALVLLENQSQLIEFNMQMDSHRHYRLKQA

Flanking regions ( +/- flanking 50bp)

GCCAGCTTCGAACTGTCACTGGTTGGCCGGCTCGATAAGGAATAACCGGAATGGGGGCGTATTATCATCGTCAGTCTTCACAACCCGTACGCCTTTTTGAACGGATAAGAGGGAAGCACGCCGGTGCTTCCCGTCAGTCCCGCACTGCTGCTCTGATTAATTCGGTCAAATCACACCTGACACTGGTGCTGAATACGCGGCCGGAAACCTGTCAGAGCAGCCGTGATCTGGGCGTGACGGATCTTAATGATGCCACCGCGACGGCGGTGGATTTCCGTGCCAGTCTGGAAACTTCCATCCGGGAATGCATTCTCCGCTATGAACCGCGTATCAGTGATGTCGCGGTGGAAGGTGTGATTGATGAGCATAACCCGCTGCTGCTGGAGTTCCGGATAACCGCACTGGTATTGCTGGAAAATCAGTCTCAGTTAATTGAATTTAATATGCAGATGGACAGTCACCGGCACTACAGACTGAAGCAGGCCTGACAGAATGCCCCGTAATCCCCGTTTTTCTGATGAACTTGAATATCTGCAAC