Homologs in group_528

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01145 FBDBKF_01145 100.0 Morganella morganii S1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
EHELCC_00400 EHELCC_00400 100.0 Morganella morganii S2 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
LHKJJB_04575 LHKJJB_04575 100.0 Morganella morganii S3 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
HKOGLL_02470 HKOGLL_02470 100.0 Morganella morganii S5 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
F4V73_RS07215 F4V73_RS07215 95.9 Morganella psychrotolerans trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
PMI_RS09190 PMI_RS09190 78.5 Proteus mirabilis HI4320 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ

Distribution of the homologs in the orthogroup group_528

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_528

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N222 3.27e-149 418 82 1 245 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A1JKQ0 4.95e-134 380 74 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A7MGX5 4.53e-132 375 74 1 240 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Cronobacter sakazakii (strain ATCC BAA-894)
A6TCF3 7.24e-132 374 72 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q667X9 2.19e-131 374 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TMV6 2.19e-131 374 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis (strain Pestoides F)
Q1CKB1 2.19e-131 374 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis bv. Antiqua (strain Nepal516)
Q7CJN8 2.19e-131 374 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis
Q1C5G8 2.19e-131 374 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis bv. Antiqua (strain Antiqua)
A8AD50 8.41e-131 372 72 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q57LG7 1.14e-130 371 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella choleraesuis (strain SC-B67)
P66974 1.18e-130 371 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P66975 1.18e-130 371 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella typhi
Q5PNG3 1.18e-130 371 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q3YZ20 5.68e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella sonnei (strain Ss046)
Q32D32 5.68e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella dysenteriae serotype 1 (strain Sd197)
Q8XA83 5.68e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O157:H7
P0AE03 5.69e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella flexneri
Q0T1Y7 5.69e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella flexneri serotype 5b (strain 8401)
Q31XV8 5.69e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella boydii serotype 4 (strain Sb227)
Q1R8K0 5.69e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli (strain UTI89 / UPEC)
P0AE01 5.69e-129 367 71 1 244 1 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli (strain K12)
P0AE02 5.69e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1AE69 5.69e-129 367 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O1:K1 / APEC
Q0TEV3 2.88e-128 365 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q6D257 1.26e-126 361 70 1 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q2NS29 2.58e-124 356 70 2 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Sodalis glossinidius (strain morsitans)
P44676 1.23e-87 262 55 4 241 1 HI_0380 Uncharacterized tRNA/rRNA methyltransferase HI_0380 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H2ZF87 2.79e-84 254 48 2 248 1 trmJ tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ Pseudomonas aeruginosa (strain UCBPP-PA14)
Q58871 6.2e-25 101 36 3 155 3 trmJ tRNA (cytidine-2'-O-)-methyltransferase TrmJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q4JB16 5.53e-23 96 38 4 156 1 trmJ tRNA (cytidine-2'-O-)-methyltransferase TrmJ Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P37005 1.14e-22 95 35 4 179 3 lasT Uncharacterized tRNA/rRNA methyltransferase LasT Escherichia coli (strain K12)
P37006 1.99e-11 64 32 2 118 3 lasT Uncharacterized tRNA/rRNA methyltransferase LasT (Fragment) Serratia marcescens

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_03060
Feature type CDS
Gene trmJ
Product tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
Location 583855 - 584592 (strand: -1)
Length 738 (nucleotides) / 245 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_528
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00588 SpoU rRNA Methylase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0565 Translation, ribosomal structure and biogenesis (J) J tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15396 tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] - -

Protein Sequence

MSENIRIVLVETSHTGNMGSAARAMKTMGLSNLYLVNPQVQPDSHAIALSAGASDVIGNAKIVSTLDEAIAGCELVIGTSARSRTLPWPMVEPRECGEKSVKIAQTAPVAIIFGRERVGLTNDELQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAFLASQNESEPANNDEADEVHYPPADDMERFYTHLESVLNESGFIRKAHPGQIMNRLRRLFTRAHPETQELNILRGILTSVEKWAKK

Flanking regions ( +/- flanking 50bp)

GACTATTCTTGTGTTAAGATATTGCGATAATTTCTCAAAGAAAGTGTGTTATGTCCGAAAATATCCGAATCGTCCTGGTTGAAACCTCACATACAGGCAATATGGGCTCCGCTGCGCGGGCTATGAAAACAATGGGGTTATCCAACCTTTATCTGGTCAATCCGCAGGTACAGCCGGACTCTCACGCCATCGCGCTGTCTGCCGGTGCCAGTGATGTTATCGGCAATGCAAAGATTGTCAGCACCCTGGATGAGGCGATTGCCGGTTGTGAACTGGTGATCGGCACCAGTGCCCGGTCACGCACACTGCCGTGGCCGATGGTTGAACCGCGTGAATGCGGGGAAAAAAGTGTTAAAATCGCACAGACCGCACCGGTCGCGATTATTTTCGGCCGTGAACGTGTCGGGCTGACCAACGATGAATTACAGAAGTGTAATTATCATCTTTATATCCCGACCAACCCGGAATACGGCTCGCTGAACCTGGCGATGGCGGTGCAGCTGGTCAGTTATGAGATCCGGATGGCATTTCTTGCCTCTCAGAATGAGAGCGAACCGGCAAATAATGATGAGGCAGATGAGGTACACTATCCGCCGGCGGATGATATGGAGCGGTTTTACACGCATCTGGAATCGGTACTGAATGAATCCGGTTTTATCCGCAAAGCACACCCGGGTCAGATTATGAACCGTCTGCGCCGCTTATTTACCCGCGCGCATCCGGAAACACAGGAGCTGAATATCCTGCGTGGAATCCTGACTTCTGTTGAGAAATGGGCGAAAAAATAGTTGAGTAAATTACTGGGTTAAATAGTTGACTAAATTACTCAGGAATGACA