Orthogroup:group_528


Homologs in group_528

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01145 FBDBKF_01145 Morganella morganii S1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
EHELCC_00400 EHELCC_00400 Morganella morganii S2 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
NLDBIP_03060 NLDBIP_03060 Morganella morganii S4 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
LHKJJB_04575 LHKJJB_04575 Morganella morganii S3 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
HKOGLL_02470 HKOGLL_02470 Morganella morganii S5 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
F4V73_RS07215 F4V73_RS07215 Morganella psychrotolerans trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
PMI_RS09190 PMI_RS09190 Proteus mirabilis HI4320 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ

Distribution of group_528 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_528 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_528

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_528.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 trmJ 7

Product

# Product Occurence
1 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0565 7 J Translation, ribosomal structure and biogenesis (J) tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15396 7 tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00588 7 SpoU rRNA Methylase family

Annotations of the 44 SwissProt hits

Annotation Number of occurrences
Putative TrmH family tRNA/rRNA methyltransferase 10
Uncharacterized tRNA/rRNA methyltransferase HI_0380 1
Uncharacterized tRNA/rRNA methyltransferase LasT 1
Uncharacterized tRNA/rRNA methyltransferase LasT (Fragment) 1
Uncharacterized tRNA/rRNA methyltransferase slr1673 1
tRNA (cytidine-2'-O-)-methyltransferase TrmJ 2
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 27
tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 1

Protein length

Min length 242
Max length 245
Mean length (sd) 244.6 (1.1)
Median length 245.0

Protein length distribution