Homologs in group_2517

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02175 FBDBKF_02175 100.0 Morganella morganii S1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
EHELCC_02645 EHELCC_02645 100.0 Morganella morganii S2 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
LHKJJB_01220 LHKJJB_01220 100.0 Morganella morganii S3 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
HKOGLL_01260 HKOGLL_01260 100.0 Morganella morganii S5 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
F4V73_RS04545 F4V73_RS04545 96.2 Morganella psychrotolerans lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB

Distribution of the homologs in the orthogroup group_2517

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2517

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q2PBM5 0.0 566 81 0 336 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus temperata
A4TQL8 0.0 552 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis (strain Pestoides F)
Q1CN18 0.0 552 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Nepal516)
A9R0S5 0.0 552 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Angola)
Q74PW2 0.0 552 80 0 334 1 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis
Q1C135 0.0 552 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Antiqua)
Q66EZ2 0.0 551 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F8 0.0 551 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1JLQ3 0.0 550 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A7FMK0 0.0 550 80 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A1JJ52 0.0 548 78 1 341 3 lsrB Autoinducer 2-binding protein LsrB Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q7MB18 0.0 548 82 0 335 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B1LF99 0.0 543 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain SMS-3-5 / SECEC)
Q8XAY9 0.0 543 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O157:H7
P76142 0.0 543 80 1 335 1 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain K12)
B1XEA4 0.0 543 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain K12 / DH10B)
B1IRU4 0.0 541 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0C888 0.0 541 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Shigella flexneri serotype 5b (strain 8401)
A7ZLX3 0.0 541 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O139:H28 (strain E24377A / ETEC)
P0C887 0.0 540 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Shigella flexneri
A8A069 0.0 540 80 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O9:H4 (strain HS)
Q2PBL7 0.0 539 81 0 335 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus luminescens
Q8Z2X8 0.0 531 79 1 335 1 lsrB Autoinducer 2-binding protein LsrB Salmonella typhi
Q8ZKQ1 0.0 531 78 1 335 1 lsrB Autoinducer 2-binding protein LsrB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG4 0.0 531 79 1 335 3 lsrB Autoinducer 2-binding protein LsrB Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
A6TEB5 0.0 530 79 1 334 3 lsrB Autoinducer 2-binding protein LsrB Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER1 0.0 529 80 1 333 3 lsrB Autoinducer 2-binding protein LsrB Enterobacter sp. (strain 638)
Q57HE0 0.0 529 78 1 335 3 lsrB Autoinducer 2-binding protein LsrB Salmonella choleraesuis (strain SC-B67)
Q5PJE4 0.0 528 78 1 335 3 lsrB Autoinducer 2-binding protein LsrB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q9I2F8 2.47e-08 58 24 9 283 1 rbsB D-ribose/D-allose-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P77269 7.39e-08 57 25 7 243 1 yphF ABC transporter periplasmic-binding protein YphF Escherichia coli (strain K12)
Q2JZQ5 2.85e-06 52 24 5 268 1 RHE_PF00037 D-apiose import binding protein Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P0A2C5 9.44e-06 50 26 11 254 1 rbsB Ribose import binding protein RbsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2C6 9.44e-06 50 26 11 254 3 rbsB Ribose import binding protein RbsB Salmonella typhi
B9JK76 1.09e-05 50 24 6 254 3 Arad_9233 D-apiose import binding protein Rhizobium rhizogenes (strain K84 / ATCC BAA-868)
P02925 1.53e-05 49 25 11 254 1 rbsB Ribose import binding protein RbsB Escherichia coli (strain K12)
B1G898 0.000119 47 24 4 281 1 BgramDRAFT_5566 D-apiose import binding protein Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M)
Q8G848 0.000609 44 33 0 81 1 fruE Fructose import binding protein FruE Bifidobacterium longum (strain NCC 2705)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_00815
Feature type CDS
Gene lsrB
Product autoinducer 2 ABC transporter substrate-binding protein LsrB
Location 167546 - 168562 (strand: 1)
Length 1017 (nucleotides) / 338 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2517
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13407 Periplasmic binding protein domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1879 Carbohydrate transport and metabolism (G) G ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10555 AI-2 transport system substrate-binding protein ABC transporters
Quorum sensing		 -

Protein Sequence

MKPIMKKLALATALSLACVSWANAAEKVAFIPKLVGVGFFTSGGQGAVEAGKKLGIDVTYDGPTEPSVSGQVQLINNFVNRGYDAIIVSAVSPDGLCPSLKRAMQRGVKVLTWDSDTNPECRSIYIDQGTPKQLGGILVDMAADQVKKEKAKVAFFYSSPTVTDQNQWVKEAKAKIEAEHPGWEVVTTQYGYNDATKSLQTAEGILNAWSDLDVIIAPDANALPAAAQAKENLKRNDVAVVGFSTPNVMRPYVERGTVNQFALWDVVKQGEISVAVADALMKKGELNVGDKITVAGVGEVEVSPNSVQGYDYEAKGNGIVVLPERVIFTKENINNYDF

Flanking regions ( +/- flanking 50bp)

TCAGAGTAAAACACGTTTGTTATCACAGATTTGACGAAATGGAGAAAACCATGAAACCCATCATGAAAAAACTGGCGCTCGCCACTGCATTAAGTCTCGCATGTGTTTCCTGGGCGAATGCAGCAGAAAAAGTCGCCTTTATTCCTAAACTTGTCGGTGTCGGCTTCTTTACCAGCGGCGGCCAGGGTGCTGTGGAAGCCGGGAAAAAACTCGGTATCGATGTCACCTACGACGGCCCGACCGAGCCGAGTGTGTCCGGTCAGGTGCAGCTTATCAACAACTTCGTTAACCGGGGCTATGACGCGATTATTGTTTCTGCCGTTTCGCCGGACGGGTTATGTCCGTCACTGAAACGCGCTATGCAGCGCGGTGTGAAAGTCCTGACCTGGGATTCCGATACCAACCCGGAATGCCGCTCCATTTATATCGACCAGGGCACACCGAAACAGCTCGGCGGCATCCTGGTGGATATGGCTGCGGATCAGGTGAAGAAAGAGAAAGCCAAAGTCGCCTTCTTCTATTCCAGCCCGACCGTAACTGACCAGAACCAGTGGGTCAAAGAAGCGAAAGCGAAAATCGAAGCCGAGCATCCGGGCTGGGAAGTCGTCACCACCCAGTACGGTTATAACGATGCCACCAAATCCTTACAGACTGCCGAAGGTATTCTTAATGCCTGGAGTGACCTGGATGTGATTATCGCGCCGGATGCCAACGCCCTGCCGGCGGCGGCTCAGGCCAAAGAGAACCTGAAACGTAACGATGTGGCGGTTGTCGGGTTCAGTACCCCGAACGTGATGCGTCCGTATGTGGAGCGCGGCACAGTTAATCAGTTCGCGTTATGGGATGTTGTCAAACAGGGCGAAATTTCTGTCGCCGTGGCTGATGCACTGATGAAAAAAGGCGAACTGAATGTCGGCGATAAGATTACCGTCGCCGGTGTCGGTGAAGTTGAAGTCTCCCCGAACAGTGTTCAGGGCTATGACTACGAAGCAAAAGGCAATGGGATTGTGGTACTGCCTGAGCGAGTAATCTTCACCAAAGAGAACATTAACAACTATGATTTCTGATGTAGTTGCTGATTTAACCAATGGCGCGGGCACCCTCCGCGCCAGTTTAA