COG1879


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1879, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 31 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG1879 is associated with 31 different proteins (see tab "Protein list" and "Profile")
The 31 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2504 FBDBKF_01860 59707 60681 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S1
1 group_2517 FBDBKF_02175 123754 124770 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S1
2 group_3237 FBDBKF_04500 94714 95709 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S1
3 group_2666 FBDBKF_04710 144934 145935 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S1
4 group_396 FBDBKF_15400 5227 6117 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S1
5 group_2504 EHELCC_02330 447527 448501 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S2
6 group_2517 EHELCC_02645 511574 512590 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S2
7 group_3237 EHELCC_05790 154171 155166 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S2
8 group_2666 EHELCC_06000 204391 205392 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S2
9 group_396 EHELCC_15760 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S2
10 group_2517 NLDBIP_00815 167546 168562 1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S4
11 group_2504 NLDBIP_01130 231635 232609 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S4
12 group_3237 NLDBIP_06110 195236 196231 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S4
13 group_2666 NLDBIP_06320 245456 246457 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S4
14 group_396 NLDBIP_16610 75246 76136 1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S4
15 group_2504 LHKJJB_00905 160076 161050 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S3
16 group_2517 LHKJJB_01220 224123 225139 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S3
17 group_3237 LHKJJB_02990 172760 173755 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S3
18 group_2666 LHKJJB_03200 222980 223981 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S3
19 group_396 LHKJJB_16195 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S3
20 group_2504 HKOGLL_00945 165587 166561 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S5
21 group_2517 HKOGLL_01260 229634 230650 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S5
22 group_3237 HKOGLL_06465 94624 95619 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S5
23 group_2666 HKOGLL_06675 144844 145845 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S5
24 group_396 HKOGLL_15965 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S5
25 group_2504 F4V73_RS04205 889580 890554 -1 substrate-binding domain-containing protein Morganella psychrotolerans
26 group_2517 F4V73_RS04545 960415 961431 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella psychrotolerans
27 group_396 F4V73_RS09115 1906365 1907291 -1 substrate-binding domain-containing protein Morganella psychrotolerans
28 group_2666 F4V73_RS09185 1923961 1924920 1 substrate-binding domain-containing protein Morganella psychrotolerans
29 group_396 F4V73_RS17745 190969 191859 1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella psychrotolerans
30 group_396 PMI_RS00430 116397 117287 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Proteus mirabilis HI4320