COG1879

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG1879
Protein list: lists the 31 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.

Description

Description ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG1879 is associated with 31 different proteins
The 31 proteins are classified into 5 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2535 FBDBKF_01860 59707 60681 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S1
1 group_2547 FBDBKF_02175 123754 124770 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S1
2 group_3238 FBDBKF_04500 94714 95709 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S1
3 group_2692 FBDBKF_04710 144934 145935 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S1
4 group_357 FBDBKF_15400 5227 6117 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S1
5 group_2535 EHELCC_02330 447527 448501 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S2
6 group_2547 EHELCC_02645 511574 512590 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S2
7 group_3238 EHELCC_05790 154171 155166 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S2
8 group_2692 EHELCC_06000 204391 205392 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S2
9 group_357 EHELCC_15760 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S2
10 group_2547 NLDBIP_00815 167546 168562 1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S4
11 group_2535 NLDBIP_01130 231635 232609 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S4
12 group_3238 NLDBIP_06110 195236 196231 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S4
13 group_2692 NLDBIP_06320 245456 246457 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S4
14 group_357 NLDBIP_16610 75246 76136 1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S4
15 group_2535 LHKJJB_00905 160076 161050 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S3
16 group_2547 LHKJJB_01220 224123 225139 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S3
17 group_3238 LHKJJB_02990 172760 173755 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S3
18 group_2692 LHKJJB_03200 222980 223981 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S3
19 group_357 LHKJJB_16195 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S3
20 group_2535 HKOGLL_00945 165587 166561 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S5
21 group_2547 HKOGLL_01260 229634 230650 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S5
22 group_3238 HKOGLL_06465 94624 95619 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S5
23 group_2692 HKOGLL_06675 144844 145845 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S5
24 group_357 HKOGLL_15965 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S5
25 group_2535 F4V73_RS04205 889580 890554 -1 substrate-binding domain-containing protein Morganella psychrotolerans
26 group_2547 F4V73_RS04545 960415 961431 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella psychrotolerans
27 group_357 F4V73_RS09115 1906365 1907291 -1 substrate-binding domain-containing protein Morganella psychrotolerans
28 group_2692 F4V73_RS09185 1923961 1924920 1 substrate-binding domain-containing protein Morganella psychrotolerans
29 group_357 F4V73_RS17745 190969 191859 1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella psychrotolerans
30 group_357 PMI_RS00430 116397 117287 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Proteus mirabilis HI4320