Homologs in group_2517

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02175 FBDBKF_02175 96.2 Morganella morganii S1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
EHELCC_02645 EHELCC_02645 96.2 Morganella morganii S2 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
NLDBIP_00815 NLDBIP_00815 96.2 Morganella morganii S4 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
LHKJJB_01220 LHKJJB_01220 96.2 Morganella morganii S3 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB
HKOGLL_01260 HKOGLL_01260 96.2 Morganella morganii S5 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB

Distribution of the homologs in the orthogroup group_2517

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2517

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q2PBM5 0.0 561 80 0 336 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus temperata
A4TQL8 0.0 543 79 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis (strain Pestoides F)
Q1CN18 0.0 543 79 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Nepal516)
A9R0S5 0.0 543 79 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Angola)
Q74PW2 0.0 543 79 0 334 1 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis
Q1C135 0.0 543 79 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Antiqua)
Q66EZ2 0.0 542 79 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F8 0.0 542 79 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q7MB18 0.0 542 81 0 335 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B1JLQ3 0.0 541 78 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A7FMK0 0.0 541 78 0 334 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A1JJ52 0.0 539 77 1 341 3 lsrB Autoinducer 2-binding protein LsrB Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q2PBL7 0.0 538 80 0 335 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus luminescens
B1LF99 0.0 537 79 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain SMS-3-5 / SECEC)
Q8XAY9 0.0 537 79 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O157:H7
P76142 0.0 536 79 1 335 1 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain K12)
B1XEA4 0.0 536 79 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain K12 / DH10B)
B1IRU4 0.0 535 79 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0C888 0.0 535 79 1 335 3 lsrB Autoinducer 2-binding protein LsrB Shigella flexneri serotype 5b (strain 8401)
A7ZLX3 0.0 535 79 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O139:H28 (strain E24377A / ETEC)
A8A069 0.0 534 78 1 335 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O9:H4 (strain HS)
P0C887 0.0 533 78 1 335 3 lsrB Autoinducer 2-binding protein LsrB Shigella flexneri
Q8Z2X8 0.0 525 78 1 335 1 lsrB Autoinducer 2-binding protein LsrB Salmonella typhi
A9MZG4 0.0 525 78 1 335 3 lsrB Autoinducer 2-binding protein LsrB Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8ZKQ1 0.0 525 77 1 335 1 lsrB Autoinducer 2-binding protein LsrB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57HE0 0.0 523 77 1 335 3 lsrB Autoinducer 2-binding protein LsrB Salmonella choleraesuis (strain SC-B67)
Q5PJE4 0.0 521 77 1 335 3 lsrB Autoinducer 2-binding protein LsrB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A4WER1 0.0 520 78 1 333 3 lsrB Autoinducer 2-binding protein LsrB Enterobacter sp. (strain 638)
A6TEB5 0.0 518 77 1 334 3 lsrB Autoinducer 2-binding protein LsrB Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q9I2F8 5.68e-08 57 24 9 283 1 rbsB D-ribose/D-allose-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P77269 1.03e-06 53 25 8 244 1 yphF ABC transporter periplasmic-binding protein YphF Escherichia coli (strain K12)
Q2JZQ5 2.54e-06 52 24 7 295 1 RHE_PF00037 D-apiose import binding protein Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P0A2C5 5.23e-06 50 26 9 251 1 rbsB Ribose import binding protein RbsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2C6 5.23e-06 50 26 9 251 3 rbsB Ribose import binding protein RbsB Salmonella typhi
P02925 7.8e-06 50 25 9 251 1 rbsB Ribose import binding protein RbsB Escherichia coli (strain K12)
B9JK76 1.85e-05 49 24 6 254 3 Arad_9233 D-apiose import binding protein Rhizobium rhizogenes (strain K84 / ATCC BAA-868)
B1G898 7.46e-05 47 23 4 292 1 BgramDRAFT_5566 D-apiose import binding protein Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M)
A6VKQ8 0.000436 45 23 8 291 1 Asuc_0175 D-apiose import binding protein Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04545
Feature type CDS
Gene lsrB
Product autoinducer 2 ABC transporter substrate-binding protein LsrB
Location 960415 - 961431 (strand: -1)
Length 1017 (nucleotides) / 338 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2517
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13407 Periplasmic binding protein domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1879 Carbohydrate transport and metabolism (G) G ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10555 AI-2 transport system substrate-binding protein ABC transporters
Quorum sensing		 -

Protein Sequence

MKPIMKKLALATALSLACVSWANAAQKVAFIPKLVGVGFFTSGGQGAVEAGKKLGIDVTYDGPTEPSVSGQVQLINNFVNRGYDAVIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTNPECRSIYIDQGTPKQLGGILVDMAADQVKKEKAKVAFFYSSPTVTDQNQWVKEAKAKIAAEHPGWEVVTTQYGYNDATKSLQTAEGIMNAWSDLDLIIAPDANALPAAAQAKENLKRNDVAVVGFSTPNVMRPYVERGTVNQFALWDVVKQGEISVAVADALMKKGELNVGDKIMVDGVGEVEVSPNSIQGYDYEAKGNGVVVLPERVIFTKKNINDYNF

Flanking regions ( +/- flanking 50bp)

TCAGAGTAAAACACGTCTTTTATCACAGATTTGACGAAATGGAGAAAACCATGAAACCCATCATGAAAAAACTGGCGCTCGCCACTGCATTAAGTCTCGCATGTGTTTCCTGGGCGAATGCAGCACAAAAAGTCGCCTTTATTCCTAAACTTGTCGGTGTCGGATTCTTTACCAGCGGCGGTCAGGGTGCAGTCGAAGCCGGGAAAAAACTCGGTATCGATGTCACGTATGACGGACCGACTGAGCCGAGTGTTTCCGGTCAGGTTCAGCTTATCAATAACTTTGTTAATCGTGGTTATGACGCGGTTATTGTCTCTGCTGTATCACCGGACGGTTTATGCCCTGCCCTTAAACGCGCCATGCAGCGCGGTGTGAAAGTGCTGACATGGGACTCGGATACCAACCCGGAATGCCGCTCCATTTATATCGACCAGGGTACGCCGAAACAGCTCGGCGGAATACTTGTGGATATGGCAGCGGATCAGGTGAAAAAAGAGAAAGCAAAAGTCGCATTCTTCTATTCCAGCCCGACTGTTACCGACCAGAACCAATGGGTAAAAGAGGCGAAAGCAAAAATCGCGGCTGAACATCCGGGCTGGGAAGTGGTTACCACACAGTATGGTTATAACGATGCGACAAAATCATTACAGACAGCCGAAGGTATCATGAATGCCTGGAGTGACCTGGATTTGATTATTGCACCGGATGCCAATGCCTTACCGGCAGCGGCTCAGGCGAAAGAAAACCTGAAACGTAATGATGTTGCGGTCGTCGGTTTCAGTACCCCGAATGTCATGCGCCCGTATGTGGAGCGCGGCACTGTTAACCAATTCGCGTTATGGGATGTGGTGAAACAGGGTGAAATATCGGTTGCTGTGGCAGATGCACTGATGAAAAAAGGCGAATTGAATGTCGGCGACAAAATTATGGTTGACGGCGTGGGTGAAGTCGAAGTTTCCCCGAACAGTATCCAGGGGTATGACTACGAAGCAAAAGGCAACGGCGTTGTTGTGCTGCCTGAGCGCGTGATTTTCACCAAAAAGAACATTAATGACTACAACTTTTAACCACCACAATTTACGGGGAGAACTCCATGGCTGATTTAGATGATATCCGT