Homologs in group_2413

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19495 FBDBKF_19495 100.0 Morganella morganii S1 eda 2-keto-3-deoxy-6-phosphogluconate aldolase
EHELCC_16440 EHELCC_16440 100.0 Morganella morganii S2 eda 2-keto-3-deoxy-6-phosphogluconate aldolase
NLDBIP_16650 NLDBIP_16650 100.0 Morganella morganii S4 eda 2-keto-3-deoxy-6-phosphogluconate aldolase
HKOGLL_18795 HKOGLL_18795 100.0 Morganella morganii S5 eda 2-keto-3-deoxy-6-phosphogluconate aldolase
F4V73_RS18630 F4V73_RS18630 81.2 Morganella psychrotolerans - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
PMI_RS13610 PMI_RS13610 74.2 Proteus mirabilis HI4320 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase

Distribution of the homologs in the orthogroup group_2413

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2413

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P38448 6.48e-115 329 76 0 213 3 eda KHG/KDPG aldolase Dickeya dadantii (strain 3937)
P0A958 5.71e-106 306 75 0 210 3 eda KHG/KDPG aldolase Shigella flexneri
P0A955 5.71e-106 306 75 0 210 1 eda KHG/KDPG aldolase Escherichia coli (strain K12)
P0A956 5.71e-106 306 75 0 210 3 eda KHG/KDPG aldolase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A957 5.71e-106 306 75 0 210 3 eda KHG/KDPG aldolase Escherichia coli O157:H7
Q15X88 4.45e-95 279 63 0 211 1 Patl_0974 2-dehydro-3-deoxy-phosphogluconate aldolase Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
P00885 1.67e-66 207 48 0 209 1 eda 2-dehydro-3-deoxy-phosphogluconate aldolase Pseudomonas putida
O68283 8.91e-65 202 48 0 192 3 eda 2-dehydro-3-deoxy-phosphogluconate aldolase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q00384 7.27e-59 187 49 2 205 1 eda KHG/KDPG aldolase Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
O83578 3.82e-50 164 42 0 204 3 eda Putative KHG/KDPG aldolase Treponema pallidum (strain Nichols)
P44480 1.52e-43 148 36 0 192 1 eda Putative KHG/KDPG aldolase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P50846 5.86e-23 94 33 2 178 2 kdgA KHG/KDPG aldolase Bacillus subtilis (strain 168)
Q6BF16 5.08e-11 62 30 4 143 1 dgoA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Escherichia coli (strain K12)
Q92RN8 1.82e-09 58 29 4 145 3 dgoA Probable 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Rhizobium meliloti (strain 1021)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_16820
Feature type CDS
Gene eda
Product 2-keto-3-deoxy-6-phosphogluconate aldolase
Location 66508 - 67149 (strand: 1)
Length 642 (nucleotides) / 213 (amino acids)

Contig

Accession ZDB_376
Length 68509 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2413
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01081 KDPG and KHG aldolase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0800 Carbohydrate transport and metabolism (G) G 2-keto-3-deoxy-6-phosphogluconate aldolase

Kegg Ortholog Annotation(s)

Protein Sequence

MNDQMLSAQSVLNAEPVVPVIVIRELHQAVPLARALVAGGIRVLEVTLRTECAIEAIRAIAEEVPEAIVGAGTVINPEQLKAVTDAGAQFAISPGLTESLLQAADQGSIPLIPGIATVSELMAGMAYGLKNFKFFPAEANGGVKALKAISGPFPDIRFCPTGGISLNNYRDYLALSSVACVGGSWLVPEDALRDGDYDRITALAAQAVAGTAA

Flanking regions ( +/- flanking 50bp)

TGCGGAAGAAGGCGCCTGCTGTATTCGTTTTTATAAAAGTGAGAATGACGATGAATGATCAGATGTTAAGTGCGCAATCCGTTTTAAATGCAGAACCGGTTGTGCCTGTCATTGTTATCCGTGAGCTGCATCAGGCAGTACCGCTGGCCCGCGCACTGGTCGCAGGCGGGATCCGCGTTCTGGAAGTCACACTGCGTACAGAGTGTGCAATTGAAGCTATCCGCGCCATTGCGGAAGAAGTGCCGGAGGCGATTGTCGGTGCGGGTACCGTGATTAATCCGGAGCAACTGAAAGCCGTCACTGACGCCGGTGCACAGTTTGCTATCAGCCCCGGTCTGACAGAATCTCTGTTGCAGGCAGCCGATCAGGGCTCCATTCCGCTGATCCCGGGGATCGCCACCGTTTCCGAGCTGATGGCGGGTATGGCTTACGGACTGAAAAATTTTAAATTCTTCCCGGCAGAAGCAAACGGCGGAGTGAAAGCGCTGAAAGCTATCTCCGGCCCCTTCCCGGATATCCGTTTCTGCCCGACCGGCGGGATCTCCCTGAATAACTACCGGGATTATCTCGCGCTCAGCAGTGTGGCCTGTGTCGGCGGTTCATGGCTGGTACCTGAAGATGCACTCCGCGACGGAGACTATGATCGTATTACCGCACTGGCGGCACAAGCCGTTGCCGGTACCGCTGCATAAAAACATCGTGAATTAAGTCTGCCTTTTGCCACCGTTCGCGGTGGCTTTTT