Homologs in group_2216

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16935 FBDBKF_16935 100.0 Morganella morganii S1 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain
EHELCC_16655 EHELCC_16655 100.0 Morganella morganii S2 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain
NLDBIP_16865 NLDBIP_16865 100.0 Morganella morganii S4 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain
HKOGLL_17570 HKOGLL_17570 100.0 Morganella morganii S5 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain
F4V73_RS18405 F4V73_RS18405 83.5 Morganella psychrotolerans - SCP2 sterol-binding domain-containing protein
PMI_RS17580 PMI_RS17580 53.3 Proteus mirabilis HI4320 - SCP2 domain-containing protein

Distribution of the homologs in the orthogroup group_2216

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2216

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9L6M5 8.63e-59 187 46 0 197 3 ubiJ Ubiquinone biosynthesis accessory factor UbiJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0ADP8 3.33e-55 177 44 0 197 3 ubiJ Ubiquinone biosynthesis accessory factor UbiJ Shigella flexneri
P0ADP7 3.33e-55 177 44 0 197 1 ubiJ Ubiquinone biosynthesis accessory factor UbiJ Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_16605
Feature type CDS
Gene ubiJ
Product Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain
Location 14973 - 15647 (strand: -1)
Length 675 (nucleotides) / 224 (amino acids)

Contig

Accession ZDB_376
Length 68509 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2216
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02036 SCP-2 sterol transfer family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3165 Coenzyme transport and metabolism (H) H Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03690 ubiquinone biosynthesis accessory factor UbiJ - -

Protein Sequence

MADTFAENIPSPVSPQALYPVVAGFLETVLNRLLYSENVLKPARARLTGKTLTLRLTEPDMQFTLIFSEKQLDVISRWEDPADCVLQTRFLTLLKLKDKQQLSALIREGDVIIDGDMQVIQHFSALLDMAEWDPAHYLAPYTGDIAAQTLTQIAVKGGQFIRRAVCRQQEYLTGALTREWALAPSALEAAHFCDEVADAAQTADELEVRLARLEKKAGTGYETE

Flanking regions ( +/- flanking 50bp)

CAATATGACCGGCGGCATTGTGGCGCTGCATAAAGGATTCAAATTCTGATATGGCTGATACGTTTGCAGAAAATATCCCGTCTCCTGTCAGTCCGCAGGCACTTTACCCTGTGGTTGCCGGATTTCTGGAAACGGTACTCAATCGGCTGTTGTACAGTGAAAATGTACTGAAACCGGCCCGCGCCCGTCTGACCGGCAAAACACTGACCCTCCGGCTGACAGAGCCGGATATGCAGTTCACGCTGATTTTCAGTGAAAAACAGCTGGATGTGATTTCCCGCTGGGAAGATCCGGCAGACTGTGTGCTGCAAACCCGTTTTCTCACGCTGCTGAAACTGAAAGACAAACAACAGCTTTCAGCTCTGATCCGGGAGGGTGATGTCATTATTGACGGCGATATGCAGGTCATTCAGCACTTTTCGGCGCTGCTGGATATGGCGGAATGGGATCCGGCACATTATCTGGCGCCGTATACCGGCGATATTGCCGCACAGACACTGACTCAGATTGCCGTAAAAGGCGGGCAGTTTATCCGTCGGGCGGTATGCCGTCAGCAGGAATATCTGACCGGCGCGCTCACCCGTGAGTGGGCACTTGCTCCTTCCGCGCTGGAAGCCGCTCATTTCTGTGATGAAGTCGCGGATGCTGCACAAACCGCCGATGAACTAGAGGTGCGCCTCGCCCGTCTGGAAAAAAAAGCAGGAACCGGGTATGAGACCGAGTGAAATAAAACGCCTCTATTTTATCATCCGCACTCTCCTGAATTACGGGCTGG