COG3165


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3165, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG3165 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2216 FBDBKF_16935 14973 15647 -1 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain Morganella morganii S1
1 group_2216 EHELCC_16655 52863 53537 1 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain Morganella morganii S2
2 group_2216 NLDBIP_16865 52863 53537 1 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain Morganella morganii S4
3 group_2216 LHKJJB_16605 14973 15647 -1 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain Morganella morganii S3
4 group_2216 HKOGLL_17570 14973 15647 -1 ubiJ Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain Morganella morganii S5
5 group_2216 F4V73_RS18405 15120 15794 -1 SCP2 sterol-binding domain-containing protein Morganella psychrotolerans
6 group_2216 PMI_RS17580 3859033 3859674 1 SCP2 domain-containing protein Proteus mirabilis HI4320