Homologs in group_2078

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15545 FBDBKF_15545 100.0 Morganella morganii S1 gadA glutamate decarboxylase
EHELCC_15905 EHELCC_15905 100.0 Morganella morganii S2 gadA glutamate decarboxylase
NLDBIP_16465 NLDBIP_16465 100.0 Morganella morganii S4 gadA glutamate decarboxylase
HKOGLL_16110 HKOGLL_16110 100.0 Morganella morganii S5 gadA glutamate decarboxylase
F4V73_RS17605 F4V73_RS17605 91.5 Morganella psychrotolerans - glutamate decarboxylase
PMI_RS06805 PMI_RS06805 63.9 Proteus mirabilis HI4320 - glutamate decarboxylase

Distribution of the homologs in the orthogroup group_2078

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2078

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q5E5Y7 0.0 639 62 2 464 1 gadA Glutamate decarboxylase Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q54VQ5 0.0 619 61 3 463 2 gadA Glutamate decarboxylase A Dictyostelium discoideum
Q54IJ3 0.0 587 58 3 465 2 gadB Glutamate decarboxylase B Dictyostelium discoideum
Q8FHG5 4.93e-176 504 55 5 440 3 gadB Glutamate decarboxylase beta Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P58228 2.83e-175 502 54 5 440 3 gadA Glutamate decarboxylase alpha Escherichia coli O157:H7
P69912 3.37e-175 502 54 5 440 3 gadB Glutamate decarboxylase beta Shigella flexneri
P69910 3.37e-175 502 54 5 440 1 gadB Glutamate decarboxylase beta Escherichia coli (strain K12)
P69911 3.37e-175 502 54 5 440 3 gadB Glutamate decarboxylase beta Escherichia coli O157:H7
P69908 4.23e-175 502 54 5 440 1 gadA Glutamate decarboxylase alpha Escherichia coli (strain K12)
P69909 4.23e-175 502 54 5 440 1 gadA Glutamate decarboxylase alpha Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q83PR1 4.28e-174 499 54 5 440 3 gadA Glutamate decarboxylase alpha Shigella flexneri
O30418 1.09e-153 447 46 5 452 1 gadB Glutamate decarboxylase Lactococcus lactis subsp. cremoris (strain MG1363)
Q928R9 1.74e-153 447 45 5 457 3 gadB Glutamate decarboxylase beta Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q9EYW9 3.23e-152 443 45 5 457 3 gadB Glutamate decarboxylase beta Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q9CG20 5.11e-152 443 46 5 452 1 gadB Glutamate decarboxylase Lactococcus lactis subsp. lactis (strain IL1403)
Q8Y4K4 6.94e-150 437 46 4 447 3 lmo2434 Probable glutamate decarboxylase gamma Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q928K4 1.39e-149 437 46 4 447 3 lin2528 Probable glutamate decarboxylase gamma Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q9LSH2 3.41e-145 427 49 4 433 2 GAD5 Glutamate decarboxylase 5 Arabidopsis thaliana
Q07346 1.18e-144 426 48 4 433 1 GAD Glutamate decarboxylase Petunia hybrida
Q9F5P3 1.06e-143 422 44 4 450 3 gadA Glutamate decarboxylase alpha Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P54767 7.24e-143 421 46 5 451 2 None Glutamate decarboxylase Solanum lycopersicum
Q42521 8.08e-142 418 46 5 447 1 GAD1 Glutamate decarboxylase 1 Arabidopsis thaliana
Q42472 6.24e-141 416 46 4 441 1 GAD2 Glutamate decarboxylase 2 Arabidopsis thaliana
Q9ZPS3 2.35e-140 414 47 4 433 1 GAD4 Glutamate decarboxylase 4 Arabidopsis thaliana
Q9ZPS4 4.6e-132 393 43 4 450 2 GAD3 Glutamate decarboxylase 3 Arabidopsis thaliana
Q04792 2.16e-102 320 39 13 490 1 GAD1 Glutamate decarboxylase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q0W498 9.44e-32 128 28 10 382 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
A0B9M9 1.92e-31 127 26 14 419 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT)
O95470 1.08e-30 128 26 13 401 1 SGPL1 Sphingosine-1-phosphate lyase 1 Homo sapiens
Q5R4G0 1.21e-30 127 25 13 402 2 SGPL1 Sphingosine-1-phosphate lyase 1 Pongo abelii
O58679 6.8e-30 123 26 14 420 1 mfnA L-aspartate/L-glutamate decarboxylase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8R0X7 2.45e-29 124 24 12 417 1 Sgpl1 Sphingosine-1-phosphate lyase 1 Mus musculus
Q12VA2 9.57e-29 119 28 10 323 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Q8CHN6 1.01e-27 119 24 12 383 2 Sgpl1 Sphingosine-1-phosphate lyase 1 Rattus norvegicus
Q9UZD5 2.32e-26 113 24 15 425 3 mfnA Probable L-aspartate decarboxylase Pyrococcus abyssi (strain GE5 / Orsay)
Q8U1P6 8.7e-26 111 26 12 384 3 mfnA Probable L-aspartate decarboxylase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q8TV92 1.35e-25 110 29 9 283 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q52RG7 4.94e-25 111 24 12 374 2 SPL Sphingosine-1-phosphate lyase Oryza sativa subsp. japonica
O27188 1.61e-24 107 27 16 375 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q9V7Y2 4.21e-24 108 24 9 332 1 Sply Sphingosine-1-phosphate lyase Drosophila melanogaster
C5A2X8 1.29e-23 105 25 15 402 3 mfnA Probable L-aspartate decarboxylase Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Q5JJ82 1.96e-23 104 29 12 323 1 mfnA L-aspartate decarboxylase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q9Y194 2.45e-23 106 26 11 331 1 spl-1 Sphingosine-1-phosphate lyase Caenorhabditis elegans
Q2FSD2 1.16e-22 102 27 11 322 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
Q9C509 1.55e-22 103 23 11 387 1 DPL1 Sphingosine-1-phosphate lyase Arabidopsis thaliana
Q05567 2.92e-22 103 25 9 339 1 DPL1 Sphingosine-1-phosphate lyase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A5ULW4 1.13e-21 99 25 16 383 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)
A2STQ3 6.01e-21 97 28 10 281 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
Q8PXA5 6.92e-21 97 24 17 422 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q46DU3 8.03e-21 97 24 14 411 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina barkeri (strain Fusaro / DSM 804)
Q54RV9 2.26e-20 97 22 12 394 2 sglA Sphingosine-1-phosphate lyase Dictyostelium discoideum
Q8TUQ9 3.79e-20 95 26 11 332 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
O28275 6.37e-20 94 25 10 303 3 mfnA Probable L-aspartate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q2NHY7 9.39e-20 94 24 13 362 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
A3CWM4 1.61e-18 90 26 10 283 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
A7IAB9 2.44e-17 86 26 10 309 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
Q3IT46 9.59e-17 84 27 14 357 3 mfnA Probable L-aspartate decarboxylase Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
B8GDM7 6.3e-16 82 25 12 304 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
Q5V1B4 1.63e-13 75 26 15 349 3 mfnA Probable L-aspartate decarboxylase Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
A6UVR4 7.69e-13 73 24 11 342 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
A6URB4 2.09e-12 72 26 10 291 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
Q5WUR6 5.02e-12 71 22 12 371 3 lpl2102 Probable sphingosine-1-phosphate lyase Legionella pneumophila (strain Lens)
Q5ZTI6 7.9e-12 70 22 10 323 3 lpg2176 Probable sphingosine-1-phosphate lyase Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Q5X3A8 1.74e-11 70 22 10 323 1 lpp2128 Probable sphingosine-1-phosphate lyase Legionella pneumophila (strain Paris)
Q60358 6.21e-11 67 24 10 289 1 mfnA L-tyrosine/L-aspartate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9HSA3 1.34e-10 66 25 13 378 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R349 1.34e-10 66 25 13 378 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
J7SZ64 4.7e-10 65 24 9 275 1 CLOSPO_02083 Tryptophan decarboxylase Clostridium sporogenes (strain ATCC 15579)
Q7X8D4 6.11e-10 64 27 11 266 3 LOC_Os04g04640 Serine decarboxylase 3 Oryza sativa subsp. japonica
Q6M0Y7 9.31e-10 63 25 8 220 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
A4G060 3.46e-09 62 25 8 218 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
A6VIC0 5.55e-09 61 25 9 219 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
Q98A07 3.38e-08 58 32 4 138 3 hdc Histidine decarboxylase Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
A0A0A2IDH4 1.2e-05 51 30 5 148 1 cnsB L-tryptophan decarboxylase cnsB Penicillium expansum
A0A2I6B3P0 3.02e-05 50 35 4 105 1 4HPAAS 4-hydroxyphenylacetaldehyde synthase Rhodiola rosea
B2HVG6 4.51e-05 49 27 5 161 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ACICU)
B0VBU8 4.63e-05 49 27 5 161 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AYE)
B7I459 4.63e-05 49 27 5 161 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AB0057)
B7GZJ8 4.63e-05 49 27 5 161 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AB307-0294)
A3M7A4 7.52e-05 48 27 5 161 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
Q56581 9.35e-05 48 23 4 158 3 hdc Histidine decarboxylase Vibrio anguillarum (strain ATCC 68554 / 775)
P95477 0.001 45 27 5 160 3 hdc Histidine decarboxylase Pseudomonas fluorescens

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_16340
Feature type CDS
Gene gadA
Product glutamate decarboxylase
Location 35800 - 37182 (strand: 1)
Length 1383 (nucleotides) / 460 (amino acids)

Contig

Accession ZDB_375
Length 80662 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2078
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00282 Pyridoxal-dependent decarboxylase conserved domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0076 Amino acid transport and metabolism (E) E Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Kegg Ortholog Annotation(s)

Protein Sequence

MSLHAVKGKNSSEFIDIYASTDSDAKLPKYKMPDDSSDPRIIYSVVRDELLLDGNSRQNLATFCTTWVEDEVKQLMTDSVDKNMIDKDEYPQTAEIESRCVHIIADLWNSPQAQETIGCSTTGSSEAAMLGGLAMKWRWRKNREKQGKETGKPNLVTGPVQVCWEKFARYFDVELRQIPLEGDALGMQPSDLRKYCDENTIGVVATLGVTFTGIYEPVAELAKELDAIQRDTGFDIPLHVDGASGGFIAPFIQPELVWDFRIERVKSINSSGHKYGLSPLGVGWVVWRSKEDLPEELVFNVDYLGGNMPTFALNFSRPGGQIIAQYYNFLRLGRAGYTKIQQACADTAQWLADELNKLGIFDLVYDGRGALPAVAYKLKPGVTQFNLYDLSDRIRTRGWLIASYPLPADREKTVVQRIMIRHGVSRDLAALLLDDIKRAIDHFRQNPVVNSTAKATFHHG

Flanking regions ( +/- flanking 50bp)

CAGTGTTAATTAATTTTAACTATCAATAAGTGATCTGAGAAGGAGGTTTTATGTCTCTTCATGCAGTGAAAGGTAAAAATAGTTCAGAATTTATTGATATTTACGCATCAACGGACTCGGATGCAAAACTCCCGAAATACAAAATGCCGGACGACAGCAGTGACCCGCGAATTATTTACAGCGTGGTCCGTGACGAATTACTGCTGGATGGTAACTCCCGTCAGAACCTGGCGACATTTTGTACAACCTGGGTTGAGGATGAAGTCAAACAGCTGATGACCGACAGTGTCGATAAAAACATGATCGACAAAGACGAATATCCGCAAACCGCAGAAATTGAAAGCCGCTGTGTGCATATTATTGCCGACCTGTGGAATTCCCCGCAGGCACAGGAAACTATCGGCTGCTCTACCACCGGCTCCAGTGAGGCGGCAATGCTCGGCGGGCTGGCAATGAAATGGCGCTGGCGTAAAAACCGAGAAAAACAGGGGAAAGAGACCGGTAAGCCAAACCTGGTAACCGGCCCGGTACAGGTGTGCTGGGAAAAATTTGCCCGCTATTTTGATGTGGAACTCCGGCAGATCCCGCTGGAAGGCGATGCCCTCGGTATGCAGCCGTCTGATCTGCGCAAATATTGCGATGAAAACACCATCGGCGTGGTGGCGACACTGGGGGTCACGTTTACCGGAATTTATGAACCGGTGGCGGAACTGGCAAAAGAACTGGATGCAATACAACGGGATACCGGTTTTGATATTCCGCTGCATGTTGATGGTGCCAGCGGCGGGTTTATCGCGCCGTTTATCCAGCCGGAACTGGTGTGGGATTTCCGGATTGAGCGGGTGAAATCCATTAACAGCTCCGGACACAAATACGGCCTGTCACCGCTGGGTGTCGGCTGGGTGGTCTGGCGCAGCAAAGAAGACCTGCCGGAAGAGCTGGTTTTCAATGTCGATTATCTCGGCGGCAATATGCCGACATTTGCACTGAACTTTTCCCGTCCCGGCGGGCAAATCATTGCACAGTATTATAATTTCCTGCGTCTGGGACGCGCCGGTTATACCAAAATTCAGCAGGCGTGTGCAGATACTGCGCAATGGCTTGCGGATGAACTGAACAAGCTGGGGATTTTCGACCTGGTGTATGACGGCCGCGGTGCACTGCCGGCGGTGGCTTACAAGCTGAAACCGGGCGTGACACAGTTCAATCTGTATGACCTTTCCGACCGCATCCGCACACGCGGCTGGCTGATAGCCTCTTATCCGCTCCCGGCGGACAGAGAGAAAACCGTTGTTCAGCGCATTATGATCCGTCACGGCGTCAGCCGCGACCTGGCTGCACTGCTGCTGGATGATATCAAGCGGGCTATCGATCACTTCAGACAAAACCCGGTAGTGAACTCGACTGCCAAAGCCACCTTCCATCACGGTTAATTTTTATACAATGACCTCCGGCCGGTATCAGCGGCCGGAGGATCTCACTC