Homologs in group_2078

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15545 FBDBKF_15545 63.9 Morganella morganii S1 gadA glutamate decarboxylase
EHELCC_15905 EHELCC_15905 63.9 Morganella morganii S2 gadA glutamate decarboxylase
NLDBIP_16465 NLDBIP_16465 63.9 Morganella morganii S4 gadA glutamate decarboxylase
LHKJJB_16340 LHKJJB_16340 63.9 Morganella morganii S3 gadA glutamate decarboxylase
HKOGLL_16110 HKOGLL_16110 63.9 Morganella morganii S5 gadA glutamate decarboxylase
F4V73_RS17605 F4V73_RS17605 64.3 Morganella psychrotolerans - glutamate decarboxylase

Distribution of the homologs in the orthogroup group_2078

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2078

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q5E5Y7 0.0 713 72 1 452 1 gadA Glutamate decarboxylase Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q54VQ5 0.0 611 59 2 459 2 gadA Glutamate decarboxylase A Dictyostelium discoideum
Q54IJ3 0.0 583 57 2 457 2 gadB Glutamate decarboxylase B Dictyostelium discoideum
P58228 0.0 573 58 2 455 3 gadA Glutamate decarboxylase alpha Escherichia coli O157:H7
P69912 0.0 573 58 2 455 3 gadB Glutamate decarboxylase beta Shigella flexneri
P69910 0.0 573 58 2 455 1 gadB Glutamate decarboxylase beta Escherichia coli (strain K12)
Q8FHG5 0.0 573 58 2 455 3 gadB Glutamate decarboxylase beta Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69911 0.0 573 58 2 455 3 gadB Glutamate decarboxylase beta Escherichia coli O157:H7
P69908 0.0 572 58 2 455 1 gadA Glutamate decarboxylase alpha Escherichia coli (strain K12)
P69909 0.0 572 58 2 455 1 gadA Glutamate decarboxylase alpha Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q83PR1 0.0 570 58 2 455 3 gadA Glutamate decarboxylase alpha Shigella flexneri
O30418 7.76e-151 440 46 4 456 1 gadB Glutamate decarboxylase Lactococcus lactis subsp. cremoris (strain MG1363)
Q9CG20 3.37e-150 438 45 4 456 1 gadB Glutamate decarboxylase Lactococcus lactis subsp. lactis (strain IL1403)
Q928R9 3.81e-149 436 45 4 458 3 gadB Glutamate decarboxylase beta Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q9EYW9 3.25e-148 433 45 4 458 3 gadB Glutamate decarboxylase beta Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P54767 4.3e-148 434 46 5 469 2 None Glutamate decarboxylase Solanum lycopersicum
Q9ZPS3 4.17e-146 429 48 5 449 1 GAD4 Glutamate decarboxylase 4 Arabidopsis thaliana
Q9LSH2 2.2e-145 427 48 4 440 2 GAD5 Glutamate decarboxylase 5 Arabidopsis thaliana
Q07346 2.8e-144 424 47 5 449 1 GAD Glutamate decarboxylase Petunia hybrida
Q928K4 9.93e-144 422 46 4 453 3 lin2528 Probable glutamate decarboxylase gamma Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q42521 1.2e-142 421 46 4 441 1 GAD1 Glutamate decarboxylase 1 Arabidopsis thaliana
Q8Y4K4 1.44e-142 419 45 4 453 3 lmo2434 Probable glutamate decarboxylase gamma Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q42472 1.42e-140 415 46 4 450 1 GAD2 Glutamate decarboxylase 2 Arabidopsis thaliana
Q9ZPS4 2.63e-140 414 46 5 449 2 GAD3 Glutamate decarboxylase 3 Arabidopsis thaliana
Q9F5P3 1.82e-138 408 43 4 453 3 gadA Glutamate decarboxylase alpha Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q04792 2.56e-99 312 40 13 465 1 GAD1 Glutamate decarboxylase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9UZD5 1.69e-25 110 26 12 385 3 mfnA Probable L-aspartate decarboxylase Pyrococcus abyssi (strain GE5 / Orsay)
Q0W498 2.01e-25 110 28 7 281 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Q8U1P6 2.95e-25 110 27 13 386 3 mfnA Probable L-aspartate decarboxylase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O58679 6.65e-25 108 26 11 367 1 mfnA L-aspartate/L-glutamate decarboxylase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
A0B9M9 8.8e-24 105 26 13 380 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT)
Q8TV92 2.06e-23 104 28 9 282 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q2FSD2 5.16e-23 103 27 9 284 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
O27188 2.17e-22 101 26 12 360 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q12VA2 3.24e-22 101 28 8 282 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
C5A2X8 1.5e-21 99 27 14 372 3 mfnA Probable L-aspartate decarboxylase Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Q5JJ82 2.52e-21 99 29 11 320 1 mfnA L-aspartate decarboxylase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q8R0X7 2.95e-21 100 22 14 432 1 Sgpl1 Sphingosine-1-phosphate lyase 1 Mus musculus
O95470 1.6e-20 97 24 16 378 1 SGPL1 Sphingosine-1-phosphate lyase 1 Homo sapiens
Q8TUQ9 2.61e-20 95 29 10 294 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q9Y194 3.37e-20 97 25 14 338 1 spl-1 Sphingosine-1-phosphate lyase Caenorhabditis elegans
Q5R4G0 7.09e-20 95 25 17 379 2 SGPL1 Sphingosine-1-phosphate lyase 1 Pongo abelii
Q9V7Y2 8.33e-20 95 23 11 340 1 Sply Sphingosine-1-phosphate lyase Drosophila melanogaster
Q8CHN6 1.48e-19 95 23 13 377 2 Sgpl1 Sphingosine-1-phosphate lyase 1 Rattus norvegicus
Q8PXA5 3.55e-19 92 26 15 377 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
A5ULW4 4.8e-19 92 25 14 364 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)
B8GDM7 1.06e-18 90 28 12 285 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
A3CWM4 1.61e-18 90 26 9 289 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
A7IAB9 2.35e-18 89 27 9 282 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
A2STQ3 3.08e-18 89 27 9 282 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
Q54RV9 3.67e-18 90 21 13 398 2 sglA Sphingosine-1-phosphate lyase Dictyostelium discoideum
Q52RG7 1.57e-17 88 23 12 377 2 SPL Sphingosine-1-phosphate lyase Oryza sativa subsp. japonica
Q46DU3 3.52e-17 86 26 8 292 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina barkeri (strain Fusaro / DSM 804)
O28275 1.2e-16 84 24 8 283 3 mfnA Probable L-aspartate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q05567 2.28e-16 85 23 12 356 1 DPL1 Sphingosine-1-phosphate lyase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9C509 4.83e-15 80 23 9 334 1 DPL1 Sphingosine-1-phosphate lyase Arabidopsis thaliana
Q3IT46 6.23e-15 79 26 13 324 3 mfnA Probable L-aspartate decarboxylase Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
Q60358 1.13e-13 75 26 12 298 1 mfnA L-tyrosine/L-aspartate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q2NHY7 1.78e-13 75 25 9 283 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
Q5V1B4 1.37e-12 72 26 13 335 3 mfnA Probable L-aspartate decarboxylase Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
Q5WUR6 2.19e-12 72 24 11 317 3 lpl2102 Probable sphingosine-1-phosphate lyase Legionella pneumophila (strain Lens)
Q5ZTI6 4.78e-12 71 22 13 374 3 lpg2176 Probable sphingosine-1-phosphate lyase Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
A6UVR4 5.67e-12 70 23 8 300 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
Q5X3A8 9.06e-12 70 23 12 321 1 lpp2128 Probable sphingosine-1-phosphate lyase Legionella pneumophila (strain Paris)
A4G060 4.48e-11 67 23 13 362 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
A6VIC0 1.64e-10 66 23 14 368 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
Q9HSA3 2.06e-10 65 26 9 279 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R349 2.06e-10 65 26 9 279 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
A6URB4 2.55e-10 65 24 9 294 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
Q6M0Y7 5.97e-10 64 23 11 341 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
J7SZ64 2.41e-08 59 22 11 357 1 CLOSPO_02083 Tryptophan decarboxylase Clostridium sporogenes (strain ATCC 15579)
Q7X8D4 2.56e-08 59 33 3 122 3 LOC_Os04g04640 Serine decarboxylase 3 Oryza sativa subsp. japonica
A0A0A2IDH4 4.91e-05 49 23 15 313 1 cnsB L-tryptophan decarboxylase cnsB Penicillium expansum

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06805
Feature type CDS
Gene -
Product glutamate decarboxylase
Location 1485617 - 1487008 (strand: -1)
Length 1392 (nucleotides) / 463 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2078
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00282 Pyridoxal-dependent decarboxylase conserved domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0076 Amino acid transport and metabolism (E) E Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Kegg Ortholog Annotation(s)

Protein Sequence

MNKKTPSYSSLDDVYASVDLSQSLPKTHFPQQESHPRHVFDAVRDELMLDGNSRQNLATFCQTWVDDEIRDLMNLSIDKNMIDKDEYPQTAEIENRCVHMLADLWHSPDPLNTLGCSTIGSSEAAMLGGLALKWQWRKKRLAAGKATDKPNLICGPVQVCWHKFARYFDVELREIPLEGDRLMMSPEEVIKRVDENTIGVVPTLGVTFTCTYEPVKAVHDALDQLQKETGLDIPIHVDGASGGFLAPFCAPDLEWDFRLPRVKSINSSGHKFGLAPLGSGWVVWREAKDLPEELIFNVNYLGGNMPTFALNFSRPGGQIIAQYYNFLRLGREGYAKIHNACYHTAQYLAREIEKLGPFEMIFSGDSQKGIPALAWKLKKEAKVSYSLYDIADKLRSRGWQVPAYSMPADRQDLVIQRILVRHGVSLDLATLLIEDMKRTLDYFEKHPVSTPLSEEDGGGFNHS

Flanking regions ( +/- flanking 50bp)

AAAATCATTTAGTCACTAATGTAATAATAATTAGTAAAGGTAATTTCAAGATGAATAAAAAAACGCCAAGTTATAGCTCACTCGATGATGTTTATGCATCGGTTGATTTATCACAATCCTTACCGAAAACACATTTTCCGCAACAAGAGAGCCATCCTCGTCATGTTTTTGATGCTGTAAGGGATGAGCTGATGCTAGATGGCAATTCAAGACAAAATCTGGCCACATTTTGTCAAACCTGGGTAGATGATGAGATCCGTGATTTGATGAATTTATCTATCGATAAGAACATGATAGATAAAGATGAATATCCACAAACGGCCGAAATTGAAAACCGTTGTGTTCATATGCTTGCTGATTTATGGCACTCACCCGATCCACTCAATACCCTAGGTTGTTCAACCATTGGCTCCTCTGAAGCGGCAATGCTGGGGGGACTTGCATTAAAATGGCAATGGCGTAAAAAACGCCTTGCTGCTGGAAAAGCGACAGATAAACCTAATCTTATTTGTGGGCCAGTTCAAGTCTGTTGGCATAAATTTGCCCGTTATTTTGACGTTGAACTCAGAGAGATCCCGCTTGAAGGTGATCGCTTGATGATGAGTCCTGAAGAGGTCATTAAACGTGTTGATGAAAATACTATCGGTGTAGTGCCAACATTAGGGGTGACCTTCACCTGTACTTATGAGCCAGTAAAAGCGGTACATGATGCACTCGACCAACTACAAAAAGAGACCGGACTTGATATTCCTATTCATGTTGATGGTGCGAGTGGTGGCTTTTTAGCGCCTTTCTGTGCACCTGATTTAGAATGGGATTTCCGTTTACCGCGTGTTAAATCCATTAACTCATCAGGCCATAAGTTTGGTTTAGCGCCATTGGGCTCTGGTTGGGTAGTATGGCGTGAAGCCAAAGACTTACCGGAAGAGCTTATTTTTAATGTGAACTACCTTGGCGGTAATATGCCAACCTTTGCGCTTAATTTCTCACGTCCCGGTGGGCAAATTATTGCTCAATACTATAATTTCTTGCGTCTTGGCAGAGAAGGGTATGCGAAGATCCACAATGCCTGTTATCACACCGCGCAATACCTTGCTCGAGAAATTGAAAAGCTAGGGCCTTTTGAAATGATCTTCAGTGGTGATAGTCAAAAAGGAATACCTGCATTAGCGTGGAAACTGAAAAAAGAGGCTAAGGTAAGCTACTCCTTATATGACATCGCTGATAAATTGCGTAGCCGTGGCTGGCAAGTACCCGCTTATTCTATGCCTGCTGATCGCCAAGATTTAGTTATTCAACGTATTCTTGTTCGTCATGGTGTGAGTTTAGATTTGGCGACATTACTGATAGAAGATATGAAACGTACTCTCGATTATTTCGAAAAACATCCTGTCAGCACACCTTTATCTGAAGAGGACGGCGGTGGCTTTAACCACAGCTAAACAGGCTCTTTTATTTGGTAATAGGTTGGAGAAATAGACTCTTTTTCTCC