Homologs in group_1959

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14685 FBDBKF_14685 100.0 Morganella morganii S1 holB DNA polymerase III, delta prime subunit
EHELCC_15490 EHELCC_15490 100.0 Morganella morganii S2 holB DNA polymerase III, delta prime subunit
NLDBIP_16020 NLDBIP_16020 100.0 Morganella morganii S4 holB DNA polymerase III, delta prime subunit
HKOGLL_14940 HKOGLL_14940 100.0 Morganella morganii S5 holB DNA polymerase III, delta prime subunit
F4V73_RS07480 F4V73_RS07480 80.4 Morganella psychrotolerans holB DNA polymerase III subunit delta'
PMI_RS04255 PMI_RS04255 52.1 Proteus mirabilis HI4320 holB DNA polymerase III subunit delta'

Distribution of the homologs in the orthogroup group_1959

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1959

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O69170 4.53e-114 337 53 1 330 3 holB DNA polymerase III subunit delta' Yersinia pestis
P28631 7.31e-90 275 49 2 322 1 holB DNA polymerase III subunit delta' Escherichia coli (strain K12)
P57435 5.58e-70 224 34 2 328 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9J2 9.62e-68 218 33 2 309 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P43748 1.13e-60 200 38 4 318 3 holB DNA polymerase III subunit delta' Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AG8 1.14e-59 197 31 6 336 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P52024 8.65e-36 135 30 3 323 3 holB DNA polymerase III subunit delta' Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8K983 2.52e-17 85 27 4 214 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P37540 1.45e-16 82 37 3 135 3 holB DNA polymerase III subunit delta' Bacillus subtilis (strain 168)
P57553 2.57e-16 82 30 2 193 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P9WNT9 1.54e-15 80 32 2 156 1 dnaX DNA polymerase III subunit gamma/tau Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WNT8 1.54e-15 80 32 2 156 3 dnaX DNA polymerase III subunit gamma/tau Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63976 1.54e-15 80 32 2 156 3 dnaX DNA polymerase III subunit gamma/tau Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q89A95 8.24e-13 72 25 1 153 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P43746 1.11e-12 72 29 1 151 3 dnaX DNA polymerase III subunit tau/gamma Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P06710 2.49e-12 71 29 1 155 1 dnaX DNA polymerase III subunit tau Escherichia coli (strain K12)
P09122 2.55e-12 71 29 1 150 3 dnaX DNA polymerase III subunit gamma/tau Bacillus subtilis (strain 168)
P74876 1.68e-11 68 29 1 155 3 dnaX DNA polymerase III subunit tau Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P38629 3.12e-08 58 28 6 200 1 RFC3 Replication factor C subunit 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P47658 7.64e-08 57 23 1 152 3 dnaX DNA polymerase III subunit gamma/tau Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P75177 1.58e-07 56 22 2 157 3 dnaX DNA polymerase III subunit gamma/tau Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q9D0F6 6.26e-07 53 28 7 198 1 Rfc5 Replication factor C subunit 5 Mus musculus
F4HW65 6.26e-07 54 31 4 156 1 At1g14460 Protein STICHEL-like 1 Arabidopsis thaliana
P75105 6.78e-07 53 32 5 139 4 MPN_007 Uncharacterized protein MG007 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P40937 7.06e-07 53 27 7 198 1 RFC5 Replication factor C subunit 5 Homo sapiens
O14003 3.54e-06 51 26 5 186 1 rfc3 Replication factor C subunit 3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O64728 9.53e-06 51 27 2 134 1 STI Protein STICHEL Arabidopsis thaliana
Q6YZ54 1.66e-05 49 29 4 146 2 RFC3 Replication factor C subunit 3 Oryza sativa subsp. japonica
Q9CAQ8 1.69e-05 49 27 3 144 1 RFC5 Replication factor C subunit 5 Arabidopsis thaliana
Q3ITJ2 8.15e-05 47 31 2 80 3 rfcS Replication factor C small subunit Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
O74111 8.45e-05 47 29 4 148 3 RFC3 Replication factor C subunit 3 Blastobotrys adeninivorans
Q54ST4 0.000174 46 23 5 190 3 rfc5 Probable replication factor C subunit 5 Dictyostelium discoideum
Q18E75 0.000202 46 28 3 90 3 rfcS Replication factor C small subunit Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)
Q9HN27 0.000672 44 28 2 81 3 rfcS Replication factor C small subunit Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R7H7 0.000672 44 28 2 81 3 rfcS Replication factor C small subunit Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
P34429 0.00068 44 26 5 162 3 F44B9.8 Probable replication factor C subunit 5 Caenorhabditis elegans
Q8PVY4 0.000836 44 30 1 78 3 rfcS Replication factor C small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q0W037 0.000848 44 25 5 162 3 rfcS Replication factor C small subunit Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Q46C63 0.001 44 28 1 91 3 rfcS Replication factor C small subunit Methanosarcina barkeri (strain Fusaro / DSM 804)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_15820
Feature type CDS
Gene holB
Product DNA polymerase III, delta prime subunit
Location 50217 - 51215 (strand: 1)
Length 999 (nucleotides) / 332 (amino acids)

Contig

Accession ZDB_374
Length 116739 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1959
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF09115 DNA polymerase III, delta subunit, C terminal
PF13177 DNA polymerase III, delta subunit
PF21500 DNA polymerase III subunit delta', AAA+ ATPase lid domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0470 Replication, recombination and repair (L) L DNA polymerase III, delta prime subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MNWYPWLNPVYRQLATAWMSGQGHHALLLYGMPGTGTDELAYALTRLRMCQQPQGIKSCGECHSCKLMLAGTHPDFYLLQPEKGKSATGIDAVRAVTEKLYEHAQQSGAKLVHIPQAELLTEAAANALLKTLEEPTENTWFVLQSLRAEQLLPTLRSRCFAYHLAPPSAETGLQWLQRGHPPSDAVSRQTALNLCHNAPAAALSLLTTADWLNRLNLFTRLAESVRSGDFLSLLSELNHQDAEKRISWLTTLFMDAVKYQQNMAPACLNQDQSVLIAQLAAHYSSAHLLNAAESWLTCRHRLMTITGVNQELLLTEQLLHQETLFSASPNLK

Flanking regions ( +/- flanking 50bp)

TCAATCCGCACTGCCGTACTGAACTGGCTGGCACAGCAGGAAGAGGCGTAATGAACTGGTATCCGTGGCTTAATCCGGTTTACCGCCAGCTGGCAACCGCGTGGATGTCCGGTCAGGGGCATCATGCTCTGCTGCTGTACGGTATGCCCGGCACCGGCACTGATGAGCTGGCCTATGCCCTGACACGGCTGCGGATGTGTCAGCAGCCGCAGGGCATCAAAAGCTGCGGGGAGTGCCACAGCTGTAAACTGATGCTGGCAGGCACCCATCCGGATTTTTATCTGCTGCAGCCGGAAAAGGGTAAATCCGCCACCGGGATTGATGCTGTGAGAGCCGTGACAGAAAAACTGTATGAGCACGCCCAGCAGAGTGGTGCCAAACTGGTGCATATTCCGCAGGCGGAACTGCTGACCGAAGCAGCCGCCAACGCCTTACTGAAAACCCTGGAAGAGCCGACAGAGAATACCTGGTTTGTGTTACAGAGCCTGCGGGCGGAGCAGTTGCTGCCGACACTGCGCAGCCGCTGTTTTGCTTATCATCTGGCACCGCCGTCAGCGGAGACCGGTTTACAGTGGTTACAGCGCGGGCATCCGCCGTCTGATGCGGTGTCGCGGCAGACTGCGCTGAATCTTTGCCACAATGCCCCGGCGGCGGCACTGTCACTGCTGACCACCGCTGACTGGCTGAACCGGCTGAATCTGTTTACCCGGCTGGCAGAATCTGTGCGCAGCGGGGATTTTCTGTCGCTGTTATCTGAGCTGAATCATCAGGATGCGGAAAAGCGCATCAGCTGGCTGACCACCCTGTTTATGGATGCGGTAAAATATCAGCAGAATATGGCACCTGCCTGTCTGAATCAGGACCAGTCTGTTCTTATTGCACAACTGGCAGCGCATTACAGCAGCGCACACTTACTGAATGCAGCGGAAAGCTGGCTGACCTGCCGCCACCGGCTGATGACCATCACCGGCGTGAATCAGGAACTGCTGCTGACAGAGCAATTGTTACACCAGGAAACCCTGTTTTCTGCATCACCTAATTTAAAATAATGAGTTAATTATGTTTTTAGTCGATTCCCATTGCCACCTCGATTGCCTGG