Orthogroup:group_1996


Homologs in group_1996

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15025 FBDBKF_15025 Morganella morganii S1 hemW radical SAM family heme chaperone HemW
EHELCC_11220 EHELCC_11220 Morganella morganii S2 hemW radical SAM family heme chaperone HemW
NLDBIP_11565 NLDBIP_11565 Morganella morganii S4 hemW radical SAM family heme chaperone HemW
LHKJJB_11425 LHKJJB_11425 Morganella morganii S3 hemW radical SAM family heme chaperone HemW
HKOGLL_10035 HKOGLL_10035 Morganella morganii S5 hemW radical SAM family heme chaperone HemW
F4V73_RS12425 F4V73_RS12425 Morganella psychrotolerans hemW radical SAM family heme chaperone HemW
PMI_RS01585 PMI_RS01585 Proteus mirabilis HI4320 hemW radical SAM family heme chaperone HemW

Distribution of group_1996 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1996 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1996

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1996.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hemW 7

Product

# Product Occurence
1 radical SAM family heme chaperone HemW 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0635 7 H Coenzyme transport and metabolism (H) Coproporphyrinogen-III oxidase HemN (oxygen-independent) or related Fe-S oxidoreductase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02495 7 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] Porphyrin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors		 Heme biosynthesis, plants and bacteria, glutamate => heme

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04055 7 Radical SAM superfamily
PF06969 7 HemN C-terminal domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG013626 7 radical SAM family heme chaperone HemW VF0758 Nutritional/Metabolic factor

Annotations of the 34 SwissProt hits

Annotation Number of occurrences
Anaerobilin synthase 1
Coproporphyrinogen III oxidase, anaerobic 1 1
Heme chaperone HemW 9
Oxygen-independent coproporphyrinogen III oxidase 13
Oxygen-independent coproporphyrinogen III oxidase (Fragment) 2
Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ 1
Putative heme chaperone HemW-like protein 1
Radical S-adenosyl methionine domain-containing protein 1, mitochondrial 5
Uncharacterized protein y4hJ 1

Protein length

Unique protein length 376

Protein length distribution