Homologs in group_1959

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14685 FBDBKF_14685 52.1 Morganella morganii S1 holB DNA polymerase III, delta prime subunit
EHELCC_15490 EHELCC_15490 52.1 Morganella morganii S2 holB DNA polymerase III, delta prime subunit
NLDBIP_16020 NLDBIP_16020 52.1 Morganella morganii S4 holB DNA polymerase III, delta prime subunit
LHKJJB_15820 LHKJJB_15820 52.1 Morganella morganii S3 holB DNA polymerase III, delta prime subunit
HKOGLL_14940 HKOGLL_14940 52.1 Morganella morganii S5 holB DNA polymerase III, delta prime subunit
F4V73_RS07480 F4V73_RS07480 50.0 Morganella psychrotolerans holB DNA polymerase III subunit delta'

Distribution of the homologs in the orthogroup group_1959

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1959

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O69170 3.04e-121 355 55 4 330 3 holB DNA polymerase III subunit delta' Yersinia pestis
P28631 8.72e-89 272 48 4 322 1 holB DNA polymerase III subunit delta' Escherichia coli (strain K12)
P57435 1.14e-69 223 36 4 325 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9J2 2.01e-67 217 34 4 309 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AG8 1.03e-64 210 34 6 339 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P43748 3.96e-64 208 38 5 315 3 holB DNA polymerase III subunit delta' Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52024 3.92e-34 130 31 5 320 3 holB DNA polymerase III subunit delta' Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P74876 5.26e-18 88 29 4 247 3 dnaX DNA polymerase III subunit tau Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P06710 5.67e-18 88 29 3 232 1 dnaX DNA polymerase III subunit tau Escherichia coli (strain K12)
P43746 3.2e-16 82 29 4 201 3 dnaX DNA polymerase III subunit tau/gamma Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57553 6.71e-16 80 32 2 144 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P9WNT9 1.4e-15 80 30 3 192 1 dnaX DNA polymerase III subunit gamma/tau Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WNT8 1.4e-15 80 30 3 192 3 dnaX DNA polymerase III subunit gamma/tau Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63976 1.4e-15 80 30 3 192 3 dnaX DNA polymerase III subunit gamma/tau Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q8K983 3.84e-14 75 26 5 218 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P09122 7.13e-14 75 29 1 140 3 dnaX DNA polymerase III subunit gamma/tau Bacillus subtilis (strain 168)
P37540 1.03e-13 74 25 8 316 3 holB DNA polymerase III subunit delta' Bacillus subtilis (strain 168)
Q89A95 8.83e-13 72 25 2 192 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P75177 1.2e-07 57 23 8 260 3 dnaX DNA polymerase III subunit gamma/tau Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47658 5.05e-07 54 23 6 205 3 dnaX DNA polymerase III subunit gamma/tau Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q8PVY4 8.57e-07 53 32 1 78 3 rfcS Replication factor C small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q6M044 1.63e-06 52 30 1 80 3 rfcS Replication factor C small subunit Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q2FQT9 1.76e-06 52 26 5 176 3 rfcS Replication factor C small subunit Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
A9A6K6 1.77e-06 52 30 1 80 3 rfcS Replication factor C small subunit Methanococcus maripaludis (strain C6 / ATCC BAA-1332)
A4FZ74 2.12e-06 52 30 1 80 3 rfcS Replication factor C small subunit Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
A6US36 2.16e-06 52 30 1 80 3 rfcS Replication factor C small subunit Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
A6VJ61 2.34e-06 52 30 1 80 3 rfcS Replication factor C small subunit Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
Q8TSX5 2.56e-06 52 32 1 78 3 rfcS Replication factor C small subunit Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q0W037 2.75e-06 52 24 4 161 3 rfcS Replication factor C small subunit Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Q46C63 3.19e-06 51 30 1 78 3 rfcS Replication factor C small subunit Methanosarcina barkeri (strain Fusaro / DSM 804)
A2SQT3 3.28e-06 51 26 3 114 3 rfcS Replication factor C small subunit Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
P75105 5.7e-06 50 27 4 136 4 MPN_007 Uncharacterized protein MG007 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
A3CUX9 1.12e-05 50 26 3 112 3 rfcS Replication factor C small subunit Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Q3ITJ2 1.68e-05 49 31 2 80 3 rfcS Replication factor C small subunit Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
Q5UZE5 1.74e-05 49 30 3 82 3 rfcS Replication factor C small subunit Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
Q9HN27 1.99e-05 49 30 1 78 3 rfcS Replication factor C small subunit Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R7H7 1.99e-05 49 30 1 78 3 rfcS Replication factor C small subunit Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
O28219 2.16e-05 49 26 2 113 1 rfcS Replication factor C small subunit Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q18E75 2.65e-05 49 29 3 82 3 rfcS Replication factor C small subunit Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)
O14003 5.67e-05 48 25 5 172 1 rfc3 Replication factor C subunit 3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A7I8Y0 0.000116 47 24 3 141 3 rfcS Replication factor C small subunit Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
Q8U4J3 0.000159 47 27 1 80 1 rfcS Replication factor C small subunit Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O57852 0.000163 47 27 1 80 3 rfcS Replication factor C small subunit Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q5JHP2 0.000254 46 27 1 80 1 rfcS Replication factor C small subunit Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
P47253 0.000402 45 22 3 135 4 MG007 Uncharacterized protein MG007 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
F4JRP0 0.000545 45 23 6 158 3 At4g18820 Protein STICHEL-like 3 Arabidopsis thaliana
Q9D0F6 0.000644 44 30 4 107 1 Rfc5 Replication factor C subunit 5 Mus musculus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04255
Feature type CDS
Gene holB
Product DNA polymerase III subunit delta'
Location 956273 - 957259 (strand: 1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1959
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF09115 DNA polymerase III, delta subunit, C terminal
PF13177 DNA polymerase III, delta subunit
PF21500 DNA polymerase III subunit delta', AAA+ ATPase lid domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0470 Replication, recombination and repair (L) L DNA polymerase III, delta prime subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MNWYPWLNQAYRQLVSMYQEGRGHHAILLHASQGMGADALSYGLSRWLMCQNKQGSKSCNECHSCRLMLAETHPDWHILQNEKGKSSIGIEAVRKVTEKLEHHAQQGGSRVVWIKEVEALTEAAANALLKTLEEPPVNCYFLLNCQQPEILLATLRSRCFYYHLAPPEMNYAIHWLQQQLPNMAYADGVTALNLSQGAPVLALSLLKQEWQEREAFCQALYVSLQQRNLYGLLAQFNQDNAERKIYWLLSLLLDALKRQTHAEVYCVNQDKQPLIMALSQLPSAMLLAVSESWKQCRHQLVTIPAINKELLLAEQLLDWEAQLVALGK

Flanking regions ( +/- flanking 50bp)

GATATTCGCGATGTACTCAATCAGTGGCTGACTCAGGAAAATAGCGCATTATGAATTGGTATCCTTGGTTAAATCAGGCATATCGACAACTGGTAAGTATGTACCAAGAAGGGCGTGGTCATCATGCGATTTTGTTGCATGCATCTCAAGGAATGGGGGCTGATGCACTTTCTTATGGATTAAGTCGTTGGTTAATGTGTCAGAATAAGCAGGGTTCAAAAAGCTGTAATGAGTGTCATAGTTGCCGTTTGATGTTGGCAGAAACACATCCAGATTGGCATATCTTGCAAAATGAAAAGGGAAAGTCATCAATAGGGATCGAAGCGGTTAGAAAAGTCACCGAAAAGCTTGAGCACCATGCACAACAAGGTGGCTCACGAGTGGTATGGATAAAAGAGGTTGAGGCATTAACAGAAGCGGCAGCCAATGCGTTATTAAAGACCTTAGAAGAGCCACCAGTTAATTGCTATTTTTTATTGAATTGTCAACAACCTGAAATATTGCTAGCAACACTACGTAGTCGCTGTTTCTATTACCATTTAGCACCGCCTGAGATGAATTATGCGATACATTGGCTACAACAACAGCTACCTAATATGGCTTATGCCGATGGTGTCACAGCATTAAACCTATCTCAAGGTGCGCCCGTTTTAGCGTTATCATTACTAAAACAAGAATGGCAAGAAAGAGAAGCCTTCTGCCAAGCGTTATATGTTAGCTTACAACAACGAAATTTATATGGGTTGTTAGCTCAGTTCAATCAAGATAATGCTGAACGTAAGATCTATTGGTTATTATCATTACTGTTGGATGCTTTAAAACGACAAACTCATGCTGAAGTGTATTGTGTCAACCAAGATAAGCAGCCATTAATTATGGCGTTATCACAGTTGCCTTCTGCAATGTTGTTAGCGGTGAGCGAAAGTTGGAAACAGTGTCGCCATCAATTAGTTACCATTCCAGCAATCAATAAAGAGCTATTGTTGGCAGAACAGTTACTTGATTGGGAAGCCCAGCTAGTTGCTCTAGGGAAATAATTTCCCTTTCTATTTAGCAGACAAGTAAAAGAAATAATATAAAGTTATAT