Homologs in group_1415

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08745 FBDBKF_08745 100.0 Morganella morganii S1 rlhA U32 family peptidase
EHELCC_12780 EHELCC_12780 100.0 Morganella morganii S2 rlhA U32 family peptidase
NLDBIP_13120 NLDBIP_13120 100.0 Morganella morganii S4 rlhA U32 family peptidase
HKOGLL_11595 HKOGLL_11595 100.0 Morganella morganii S5 rlhA U32 family peptidase
F4V73_RS09960 F4V73_RS09960 91.1 Morganella psychrotolerans - U32 family peptidase
PMI_RS17150 PMI_RS17150 80.5 Proteus mirabilis HI4320 - U32 family peptidase

Distribution of the homologs in the orthogroup group_1415

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1415

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45475 1.16e-163 459 73 0 290 1 ubiV Ubiquinone biosynthesis protein UbiV Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_13435
Feature type CDS
Gene rlhA
Product U32 family peptidase
Location 129820 - 130698 (strand: -1)
Length 879 (nucleotides) / 292 (amino acids)

Contig

Accession ZDB_370
Length 162442 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1415
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01136 Peptidase family U32

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0826 Translation, ribosomal structure and biogenesis (J) J 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K24845 O2-independent ubiquinone biosynthesis protein UbiV - -

Protein Sequence

MQFSLGSVLYYWPKATLEQFYQQAMQSSADIIYLGETVCSKRREMKPDDWINLAKTVAGSGKQVVISTLALLQAPSELKEIAKLVDNGEFMIEAHDFGVINMLHERGLPFVAGHGLNCYNAPALKILQKQGMTRWCMPVELSRDWLVNLLKQCEELGIRDKFEVEVMSYGHLPLAYSARCFTARSENRAKDDCETCCINYPQGRKVLSQENQQVFVLNGIQTQSGYCYNLGNDLRSMHGLVDIVRISPDAPDDLAVIDHFRQNETGAQPLDLAQAQNCNGYWRKVAGLELVE

Flanking regions ( +/- flanking 50bp)

ACCACACTCGGTGCCTATCACCGCAAATGGCAGTAACGGAGAGAAAAACGATGCAATTTTCATTAGGTTCAGTCCTCTATTACTGGCCGAAAGCGACACTGGAACAGTTTTATCAGCAGGCAATGCAAAGCAGTGCGGATATTATCTATCTCGGCGAAACCGTGTGCAGCAAGCGCCGGGAAATGAAACCGGATGACTGGATAAATCTCGCTAAAACAGTTGCCGGAAGCGGCAAGCAGGTGGTTATCTCCACGCTGGCACTGTTACAGGCCCCGTCCGAGCTGAAAGAGATCGCCAAACTGGTGGATAACGGCGAATTTATGATCGAAGCTCATGATTTCGGCGTGATTAATATGCTGCACGAGCGCGGGCTGCCGTTTGTCGCCGGACACGGCCTGAACTGTTATAACGCCCCGGCGCTGAAAATTCTGCAAAAACAGGGGATGACACGCTGGTGCATGCCGGTGGAGCTGTCCCGTGACTGGCTGGTGAACCTGCTGAAGCAATGTGAAGAGCTGGGGATCCGCGACAAATTTGAAGTGGAAGTGATGAGCTACGGCCATCTGCCGCTGGCCTACTCCGCCCGCTGCTTCACCGCCCGTTCGGAAAACCGCGCCAAAGATGACTGCGAAACCTGCTGCATCAACTATCCGCAGGGGCGCAAAGTACTCTCGCAGGAAAATCAGCAGGTATTTGTCCTTAACGGGATCCAGACACAGAGCGGTTACTGCTATAACCTCGGCAATGATCTGCGTTCCATGCATGGACTGGTGGATATCGTGCGGATCTCCCCGGATGCACCGGACGATCTGGCGGTCATCGACCATTTCCGTCAGAATGAAACCGGCGCACAGCCGCTCGATCTGGCACAGGCACAAAACTGCAACGGCTACTGGCGTAAAGTGGCGGGCCTGGAACTGGTGGAATAACGGAAGGAAATAACCATGACTGATGTTTATGCCCGTTTAAAAGCACTGAA