COG0826


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0826, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0826 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1415 FBDBKF_08745 131102 131980 -1 rlhA U32 family peptidase Morganella morganii S1
1 group_1416 FBDBKF_08750 131995 132990 -1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family Morganella morganii S1
2 group_2186 FBDBKF_16460 14950 16341 -1 yegQ tRNA 5-hydroxyuridine modification protein YegQ Morganella morganii S1
3 group_2186 EHELCC_08325 131936 133327 -1 yegQ tRNA 5-hydroxyuridine modification protein YegQ Morganella morganii S2
4 group_1416 EHELCC_12775 30735 31730 1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family Morganella morganii S2
5 group_1415 EHELCC_12780 31745 32623 1 rlhA U32 family peptidase Morganella morganii S2
6 group_2186 NLDBIP_08650 131936 133327 -1 yegQ tRNA 5-hydroxyuridine modification protein YegQ Morganella morganii S4
7 group_1416 NLDBIP_13115 30735 31730 1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family Morganella morganii S4
8 group_1415 NLDBIP_13120 31745 32623 1 rlhA U32 family peptidase Morganella morganii S4
9 group_2186 LHKJJB_05615 123832 125223 1 yegQ tRNA 5-hydroxyuridine modification protein YegQ Morganella morganii S3
10 group_1415 LHKJJB_13435 129820 130698 -1 rlhA U32 family peptidase Morganella morganii S3
11 group_1416 LHKJJB_13440 130713 131708 -1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family Morganella morganii S3
12 group_2186 HKOGLL_05300 116527 117918 -1 yegQ tRNA 5-hydroxyuridine modification protein YegQ Morganella morganii S5
13 group_1416 HKOGLL_11590 30735 31730 1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family Morganella morganii S5
14 group_1415 HKOGLL_11595 31745 32623 1 rlhA U32 family peptidase Morganella morganii S5
15 group_2186 F4V73_RS02975 630747 632138 -1 yegQ tRNA 5-hydroxyuridine modification protein YegQ Morganella psychrotolerans
16 group_1415 F4V73_RS09960 99153 100031 -1 U32 family peptidase Morganella psychrotolerans
17 group_1416 F4V73_RS09965 100046 101041 -1 peptidase U32 family protein Morganella psychrotolerans
18 group_2186 PMI_RS07755 1697955 1699334 1 yegQ tRNA 5-hydroxyuridine modification protein YegQ Proteus mirabilis HI4320
19 group_1415 PMI_RS17150 3772523 3773401 -1 U32 family peptidase Proteus mirabilis HI4320
20 group_1416 PMI_RS17155 3773416 3774411 -1 peptidase U32 family protein Proteus mirabilis HI4320