COG0826
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0826, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family |
Function(s) descr. |
Translation, ribosomal structure and biogenesis (J) |
Occurence in the database
COG0826 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1415 |
FBDBKF_08745 |
131102 |
131980 |
-1 |
rlhA |
U32 family peptidase |
Morganella morganii S1 |
1 |
group_1416 |
FBDBKF_08750 |
131995 |
132990 |
-1 |
rlhA |
23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family |
Morganella morganii S1 |
2 |
group_2186 |
FBDBKF_16460 |
14950 |
16341 |
-1 |
yegQ |
tRNA 5-hydroxyuridine modification protein YegQ |
Morganella morganii S1 |
3 |
group_2186 |
EHELCC_08325 |
131936 |
133327 |
-1 |
yegQ |
tRNA 5-hydroxyuridine modification protein YegQ |
Morganella morganii S2 |
4 |
group_1416 |
EHELCC_12775 |
30735 |
31730 |
1 |
rlhA |
23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family |
Morganella morganii S2 |
5 |
group_1415 |
EHELCC_12780 |
31745 |
32623 |
1 |
rlhA |
U32 family peptidase |
Morganella morganii S2 |
6 |
group_2186 |
NLDBIP_08650 |
131936 |
133327 |
-1 |
yegQ |
tRNA 5-hydroxyuridine modification protein YegQ |
Morganella morganii S4 |
7 |
group_1416 |
NLDBIP_13115 |
30735 |
31730 |
1 |
rlhA |
23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family |
Morganella morganii S4 |
8 |
group_1415 |
NLDBIP_13120 |
31745 |
32623 |
1 |
rlhA |
U32 family peptidase |
Morganella morganii S4 |
9 |
group_2186 |
LHKJJB_05615 |
123832 |
125223 |
1 |
yegQ |
tRNA 5-hydroxyuridine modification protein YegQ |
Morganella morganii S3 |
10 |
group_1415 |
LHKJJB_13435 |
129820 |
130698 |
-1 |
rlhA |
U32 family peptidase |
Morganella morganii S3 |
11 |
group_1416 |
LHKJJB_13440 |
130713 |
131708 |
-1 |
rlhA |
23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family |
Morganella morganii S3 |
12 |
group_2186 |
HKOGLL_05300 |
116527 |
117918 |
-1 |
yegQ |
tRNA 5-hydroxyuridine modification protein YegQ |
Morganella morganii S5 |
13 |
group_1416 |
HKOGLL_11590 |
30735 |
31730 |
1 |
rlhA |
23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family |
Morganella morganii S5 |
14 |
group_1415 |
HKOGLL_11595 |
31745 |
32623 |
1 |
rlhA |
U32 family peptidase |
Morganella morganii S5 |
15 |
group_2186 |
F4V73_RS02975 |
630747 |
632138 |
-1 |
yegQ |
tRNA 5-hydroxyuridine modification protein YegQ |
Morganella psychrotolerans |
16 |
group_1415 |
F4V73_RS09960 |
99153 |
100031 |
-1 |
|
U32 family peptidase |
Morganella psychrotolerans |
17 |
group_1416 |
F4V73_RS09965 |
100046 |
101041 |
-1 |
|
peptidase U32 family protein |
Morganella psychrotolerans |
18 |
group_2186 |
PMI_RS07755 |
1697955 |
1699334 |
1 |
yegQ |
tRNA 5-hydroxyuridine modification protein YegQ |
Proteus mirabilis HI4320 |
19 |
group_1415 |
PMI_RS17150 |
3772523 |
3773401 |
-1 |
|
U32 family peptidase |
Proteus mirabilis HI4320 |
20 |
group_1416 |
PMI_RS17155 |
3773416 |
3774411 |
-1 |
|
peptidase U32 family protein |
Proteus mirabilis HI4320 |