Homologs in group_1471

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08745 FBDBKF_08745 91.1 Morganella morganii S1 rlhA U32 family peptidase
EHELCC_12780 EHELCC_12780 91.1 Morganella morganii S2 rlhA U32 family peptidase
NLDBIP_13120 NLDBIP_13120 91.1 Morganella morganii S4 rlhA U32 family peptidase
LHKJJB_13435 LHKJJB_13435 91.1 Morganella morganii S3 rlhA U32 family peptidase
HKOGLL_11595 HKOGLL_11595 91.1 Morganella morganii S5 rlhA U32 family peptidase
PMI_RS17150 PMI_RS17150 77.4 Proteus mirabilis HI4320 - U32 family peptidase

Distribution of the homologs in the orthogroup group_1471

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1471

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45475 2.14e-163 458 72 0 290 1 ubiV Ubiquinone biosynthesis protein UbiV Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09960
Feature type CDS
Gene -
Product U32 family peptidase
Location 99153 - 100031 (strand: -1)
Length 879 (nucleotides) / 292 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000002
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1471
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01136 Peptidase family U32

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0826 Translation, ribosomal structure and biogenesis (J) J 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

Protein Sequence

MQFSLGSVLYYWPNATLEQFYQQAAQSSADIIYLGETVCSKRREMKPDNWIDLAKTVAKSGKQVVISTLAMLQAPSELKEITKLVDNGEFMLEAHDFGVINMLHERGLPFVAGHGLNCYNAPALKILQKQGMMRWCMPVELSRDWLVNLLKQCDELGIRDKFEVEVMSYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRKVLSQENQQVFVLNGTQTQSGYCYNLGNDLRSMQGLVDIVRISPDAPEDIAVIDDFRHNRDGTQPLDLTQAQDCNGYWRNIAGLELVE

Flanking regions ( +/- flanking 50bp)

ACCACACTCGGCGCTTATCACCGCAAATGGCAGTAACGGGGAGAAAAACAATGCAATTTTCATTAGGTTCAGTCCTCTATTACTGGCCGAACGCGACACTGGAGCAGTTTTATCAGCAGGCCGCACAAAGCAGTGCCGATATCATCTATCTCGGGGAAACCGTGTGCAGCAAGCGCCGGGAAATGAAGCCGGATAACTGGATAGATCTCGCCAAAACGGTGGCGAAAAGCGGCAAACAGGTGGTGATTTCCACCCTGGCAATGCTCCAGGCGCCTTCTGAACTGAAAGAGATAACCAAACTGGTGGATAACGGCGAGTTTATGCTGGAAGCCCATGATTTTGGTGTGATTAACATGCTGCATGAGCGCGGGTTGCCTTTTGTGGCAGGACACGGACTGAACTGTTATAACGCCCCGGCACTGAAAATCCTGCAAAAACAGGGCATGATGCGCTGGTGTATGCCGGTTGAGTTATCCCGCGACTGGCTGGTTAATTTGCTGAAGCAATGCGACGAGCTGGGGATCCGCGATAAATTCGAAGTGGAAGTGATGAGCTACGGACACCTGCCACTGGCCTATTCCGCCCGCTGTTTCACGGCGCGTTCAGAAAACCGCGGTAAAGATGAATGTGAAACCTGCTGTATTAAGTATCCGCAGGGGCGCAAGGTTCTCTCACAGGAAAATCAGCAGGTCTTTGTGCTCAACGGCACACAGACCCAGAGCGGCTACTGTTATAACCTCGGTAACGATCTGCGTTCAATGCAGGGATTAGTGGATATTGTGCGCATTTCACCTGATGCCCCGGAAGATATCGCCGTTATCGACGATTTCCGCCACAACCGGGACGGCACACAGCCGCTGGATCTGACACAGGCACAAGACTGTAACGGCTACTGGCGCAATATTGCAGGTCTTGAATTGGTGGAATAAACATAAAGTAAAAGCCCCTGCATTTATCTGAATTGCAGGGGTTGAAATCA