Homologs in group_1907

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14220 FBDBKF_14220 100.0 Morganella morganii S1 yfcD NUDIX hydrolase YfcD
EHELCC_08060 EHELCC_08060 100.0 Morganella morganii S2 yfcD NUDIX hydrolase YfcD
NLDBIP_08385 NLDBIP_08385 100.0 Morganella morganii S4 yfcD NUDIX hydrolase YfcD
HKOGLL_05035 HKOGLL_05035 100.0 Morganella morganii S5 yfcD NUDIX hydrolase YfcD
F4V73_RS02690 F4V73_RS02690 85.9 Morganella psychrotolerans yfcD NUDIX hydrolase YfcD
PMI_RS08725 PMI_RS08725 78.7 Proteus mirabilis HI4320 yfcD NUDIX hydrolase YfcD

Distribution of the homologs in the orthogroup group_1907

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1907

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P65559 1.79e-89 263 76 1 173 3 yfcD Uncharacterized Nudix hydrolase YfcD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P65560 1.79e-89 263 76 1 173 3 yfcD Uncharacterized Nudix hydrolase YfcD Salmonella typhi
P65556 1.52e-87 258 77 1 171 1 yfcD Uncharacterized Nudix hydrolase YfcD Escherichia coli (strain K12)
P65557 1.52e-87 258 77 1 171 3 yfcD Uncharacterized Nudix hydrolase YfcD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P65558 1.52e-87 258 77 1 171 3 yfcD Uncharacterized Nudix hydrolase YfcD Escherichia coli O157:H7
Q8ZD12 2.88e-87 257 77 2 173 3 YPO2781 Uncharacterized Nudix hydrolase YPO2781/y1614/YP_2383 Yersinia pestis
P59196 2.71e-86 254 76 1 171 3 yfcD Uncharacterized Nudix hydrolase YfcD Shigella flexneri
Q9HUW9 2.12e-33 120 42 1 158 3 PA4841 Uncharacterized Nudix hydrolase PA4841 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9S266 1.28e-23 95 38 3 160 3 SCO1686 Uncharacterized Nudix hydrolase SCO1686 Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9ZG11 1.35e-13 68 34 6 175 3 None Uncharacterized Nudix hydrolase orf19 Rhodococcus erythropolis
Q9X7Q6 1.04e-10 61 30 3 153 3 idi Isopentenyl-diphosphate Delta-isomerase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q82MJ7 2.21e-10 60 28 2 145 3 idi Isopentenyl-diphosphate Delta-isomerase Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)
Q9RY71 2.28e-10 60 27 2 145 1 DR_0079 Nudix hydrolase DR_0079 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
B1VTW2 2.7e-10 60 31 2 145 3 idi Isopentenyl-diphosphate Delta-isomerase Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
Q8Y9Z9 2.53e-08 54 28 6 149 3 lmo0368 Uncharacterized Nudix hydrolase lmo0368 Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
A8GDW2 4.52e-08 53 30 0 84 3 idi Isopentenyl-diphosphate Delta-isomerase Serratia proteamaculans (strain 568)
Q8YKE7 1.61e-07 52 36 2 87 3 all7351 Uncharacterized Nudix hydrolase all7351 Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
A1T5G2 1.89e-07 52 32 1 94 3 idi Isopentenyl-diphosphate Delta-isomerase Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1)
A9AST0 9.4e-07 50 34 0 83 3 idi Isopentenyl-diphosphate Delta-isomerase Burkholderia multivorans (strain ATCC 17616 / 249)
Q97LV8 1.96e-06 49 31 3 93 3 CA_C0446 Uncharacterized Nudix hydrolase CA_C0446 Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q92ES1 5.16e-06 48 27 4 144 3 lin0387 Uncharacterized Nudix hydrolase lin0387 Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q7N0A6 5.41e-06 48 30 1 96 3 idi2 Isopentenyl-diphosphate Delta-isomerase 2 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B0RIB7 1.14e-05 47 28 5 168 3 idi Isopentenyl-diphosphate Delta-isomerase Clavibacter sepedonicus
Q38929 1.6e-05 47 26 7 185 1 IPP1 Isopentenyl-diphosphate Delta-isomerase I, chloroplastic Arabidopsis thaliana
Q8L831 1.65e-05 48 30 5 145 1 NUDT3 Nudix hydrolase 3 Arabidopsis thaliana
Q5NWG5 2.65e-05 46 32 0 84 3 idi2 Isopentenyl-diphosphate Delta-isomerase 2 Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1)
Q5YYB6 2.97e-05 46 28 4 145 3 idi Isopentenyl-diphosphate Delta-isomerase Nocardia farcinica (strain IFM 10152)
Q6A5Z1 4.11e-05 45 33 1 87 3 idi Isopentenyl-diphosphate Delta-isomerase Cutibacterium acnes (strain DSM 16379 / KPA171202)
A5CV36 4.7e-05 45 27 5 168 3 idi Isopentenyl-diphosphate Delta-isomerase Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Q8KP37 6.97e-05 45 26 6 181 3 idi Isopentenyl-diphosphate Delta-isomerase Agromyces mediolanus
Q9KK75 8.33e-05 44 33 1 89 3 idi Isopentenyl-diphosphate Delta-isomerase Brevibacterium linens
Q6D3F5 0.000115 44 27 4 158 3 idi Isopentenyl-diphosphate Delta-isomerase Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
O48964 0.000223 43 29 5 124 2 IPI1 Isopentenyl-diphosphate Delta-isomerase I Camptotheca acuminata
Q9BXS1 0.00025 43 25 5 143 1 IDI2 Isopentenyl-diphosphate delta-isomerase 2 Homo sapiens
Q9KWD1 0.000571 42 27 1 94 3 idi Isopentenyl-diphosphate Delta-isomerase Rhizobium rhizogenes
B5F9P6 0.000622 42 26 6 152 3 idi Isopentenyl-diphosphate Delta-isomerase Aliivibrio fischeri (strain MJ11)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_05880
Feature type CDS
Gene yfcD
Product NUDIX hydrolase YfcD
Location 184233 - 184808 (strand: -1)
Length 576 (nucleotides) / 191 (amino acids)

Contig

Accession ZDB_362
Length 257361 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1907
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00293 NUDIX domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1443 Lipid transport and metabolism (I) I Isopentenyldiphosphate isomerase

Kegg Ortholog Annotation(s)

Protein Sequence

MEQDNAIEWVDVVDENNDVIGQATREQMRAENLRHRATYIVVHDGMGKILVQRRTEHKDYCPGLLDATAGGVVQQGELMLDSARREAEEELGIAGVPFAEHGLFYYEEPVCRVWGGLFSCVTHGPFALQESEVSEVTWLTPAEITARCDEFTADSLKALSLWLTRNNQNYTTAERQKPVATPEAEMSSDGE

Flanking regions ( +/- flanking 50bp)

AAAAACAGAAACAGCATCCGTAATGCTGATAAAAAAGAAAAGGTTAGAGGATGGAACAAGATAACGCTATCGAGTGGGTGGACGTGGTCGATGAGAATAATGATGTCATCGGCCAGGCGACCCGCGAGCAGATGCGGGCGGAAAACCTGCGTCACCGGGCAACCTACATCGTTGTGCATGACGGCATGGGAAAAATTCTTGTCCAGCGCCGGACTGAGCACAAAGACTACTGCCCGGGTCTGCTGGATGCCACTGCCGGCGGTGTGGTGCAGCAGGGTGAGCTGATGCTCGATTCTGCCCGGCGCGAAGCAGAGGAAGAACTCGGGATCGCCGGTGTGCCGTTTGCCGAACACGGTCTGTTTTATTATGAAGAGCCGGTCTGCCGTGTCTGGGGCGGGTTATTCAGCTGTGTGACTCACGGGCCGTTCGCGCTTCAGGAAAGTGAAGTATCTGAAGTCACCTGGCTGACCCCGGCAGAAATCACTGCCCGCTGTGACGAATTTACGGCCGATTCACTGAAAGCACTCTCACTCTGGCTGACCCGGAATAATCAGAATTATACCACGGCAGAGCGGCAGAAGCCGGTTGCAACGCCTGAAGCTGAAATGAGCAGCGACGGCGAATAAAAAAGAATAAAAACCGGAGAAGCCTGCAATATGCAGGCTTTTTTATATTT