COG1443


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1443, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Isopentenyldiphosphate isomerase
Function(s) descr. Lipid transport and metabolism (I)

Occurence in the database

COG1443 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1709 FBDBKF_11910 32458 32979 1 idi isopentenyl-diphosphate Delta-isomerase Morganella morganii S1
1 group_1907 FBDBKF_14220 44059 44634 -1 yfcD NUDIX hydrolase YfcD Morganella morganii S1
2 group_1907 EHELCC_08060 72351 72926 1 yfcD NUDIX hydrolase YfcD Morganella morganii S2
3 group_1709 EHELCC_14395 101726 102247 -1 idi isopentenyl-diphosphate Delta-isomerase Morganella morganii S2
4 group_1907 NLDBIP_08385 72351 72926 1 yfcD NUDIX hydrolase YfcD Morganella morganii S4
5 group_1709 NLDBIP_15490 105663 106184 -1 idi isopentenyl-diphosphate Delta-isomerase Morganella morganii S4
6 group_1907 LHKJJB_05880 184233 184808 -1 yfcD NUDIX hydrolase YfcD Morganella morganii S3
7 group_1709 LHKJJB_15120 32458 32979 1 idi isopentenyl-diphosphate Delta-isomerase Morganella morganii S3
8 group_1907 HKOGLL_05035 56942 57517 1 yfcD NUDIX hydrolase YfcD Morganella morganii S5
9 group_1709 HKOGLL_14240 19121 19642 1 idi isopentenyl-diphosphate Delta-isomerase Morganella morganii S5
10 group_1907 F4V73_RS02690 566003 566635 1 yfcD NUDIX hydrolase YfcD Morganella psychrotolerans
11 group_1709 F4V73_RS14745 184324 184860 -1 idi isopentenyl-diphosphate Delta-isomerase Morganella psychrotolerans
12 group_1907 PMI_RS08725 1909785 1910327 -1 yfcD NUDIX hydrolase YfcD Proteus mirabilis HI4320
13 group_1709 PMI_RS13640 3031590 3032126 1 idi isopentenyl-diphosphate Delta-isomerase Proteus mirabilis HI4320