Homologs in group_24

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17 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04810 FBDBKF_04810 100.0 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_11115 FBDBKF_11115 47.8 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_17770 FBDBKF_17770 50.2 Morganella morganii S1 nupC Nucleoside permease NupC
EHELCC_05110 EHELCC_05110 47.8 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_06100 EHELCC_06100 100.0 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_09795 EHELCC_09795 50.2 Morganella morganii S2 nupC Nucleoside permease NupC
NLDBIP_05430 NLDBIP_05430 47.8 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_06420 NLDBIP_06420 100.0 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_10175 NLDBIP_10175 50.2 Morganella morganii S4 nupC Nucleoside permease NupC
LHKJJB_02310 LHKJJB_02310 47.8 Morganella morganii S3 nupC Nucleoside permease NupC
LHKJJB_07580 LHKJJB_07580 50.2 Morganella morganii S3 nupC Nucleoside permease NupC
HKOGLL_06775 HKOGLL_06775 100.0 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_07130 HKOGLL_07130 50.2 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_15690 HKOGLL_15690 47.8 Morganella morganii S5 nupC Nucleoside permease NupC
F4V73_RS08155 F4V73_RS08155 48.6 Morganella psychrotolerans - NupC/NupG family nucleoside CNT transporter
F4V73_RS15195 F4V73_RS15195 50.0 Morganella psychrotolerans - NupC/NupG family nucleoside CNT transporter
PMI_RS11960 PMI_RS11960 52.3 Proteus mirabilis HI4320 - NupC/NupG family nucleoside CNT transporter

Distribution of the homologs in the orthogroup group_24

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_24

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33021 0.0 578 72 1 416 1 nupX Putative nucleoside permease NupX Escherichia coli (strain K12)
P33024 0.0 573 72 1 416 1 psuT Putative pseudouridine transporter Escherichia coli (strain K12)
P44742 1.46e-136 400 50 4 421 3 HI_0519 Uncharacterized transporter HI_0519 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O32115 1.62e-117 351 47 4 413 3 yutK Uncharacterized transporter YutK Bacillus subtilis (strain 168)
O25792 4.1e-116 348 45 4 414 3 nupC Nucleoside permease NupC Helicobacter pylori (strain ATCC 700392 / 26695)
Q9UA35 6.86e-78 257 34 5 427 2 SLC28A3 Solute carrier family 28 member 3 Eptatretus stoutii
E9PXX9 1.95e-74 247 32 3 423 2 Slc28a1 Sodium/nucleoside cotransporter 1 Mus musculus
Q62674 5.87e-73 243 32 3 423 1 Slc28a1 Sodium/nucleoside cotransporter 1 Rattus norvegicus
O62667 9.57e-72 240 31 3 423 2 SLC28A1 Sodium/nucleoside cotransporter 1 Sus scrofa
O00337 3.25e-71 239 32 3 423 1 SLC28A1 Sodium/nucleoside cotransporter 1 Homo sapiens
Q9MZT2 2.34e-68 231 31 5 423 2 SLC28A1 Sodium/nucleoside cotransporter 1 Oryctolagus cuniculus
O43868 9e-67 227 31 4 423 1 SLC28A2 Sodium/nucleoside cotransporter 2 Homo sapiens
Q8VIH3 9.59e-67 228 32 5 428 2 Slc28a3 Solute carrier family 28 member 3 Rattus norvegicus
O88627 3.76e-66 226 31 4 423 1 Slc28a2 Sodium/nucleoside cotransporter 2 Mus musculus
Q62773 5.43e-66 225 31 4 423 1 Slc28a2 Sodium/nucleoside cotransporter 2 Rattus norvegicus
Q9ERH8 5.74e-66 226 32 5 423 2 Slc28a3 Solute carrier family 28 member 3 Mus musculus
Q9HAS3 3.63e-64 221 31 3 421 1 SLC28A3 Solute carrier family 28 member 3 Homo sapiens
P39141 3.58e-53 185 31 6 411 2 nupC Nucleoside permease NupC Bacillus subtilis (strain 168)
P0AFF2 1.34e-49 176 29 7 412 1 nupC Nucleoside permease NupC Escherichia coli (strain K12)
P0AFF3 1.34e-49 176 29 7 412 3 nupC Nucleoside permease NupC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P42312 2.27e-45 164 29 8 416 1 nupG Purine nucleoside transport protein NupG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_03300
Feature type CDS
Gene nupC
Product Nucleoside permease NupC
Location 245952 - 247214 (strand: -1)
Length 1263 (nucleotides) / 420 (amino acids)

Contig

Accession ZDB_360
Length 302856 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_24
Orthogroup size 18
N. genomes 7

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Genomic region

Domains

PF01773 Na+ dependent nucleoside transporter N-terminus
PF07662 Na+ dependent nucleoside transporter C-terminus
PF07670 Nucleoside recognition

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1972 Nucleotide transport and metabolism (F) F Nucleoside permease NupC

Protein Sequence

MDLLRSLAGIGVLLLIAFLFSVNKRKISLRTVGAALLLQVALGAIMLYIPAGKWFIQTIASGVNNVIAYSDAGSSFIFGSLVGPKMDVLFDGAGFIFAFRVLPAIIFITSLIAILYYLGIMRWVINVLAYVFQKTMKISKIESFAAVTTIFLGQNELPAVLKPFVSRMNNNELFTVICSGMASIAGSMLVGYAGLGVPIEYLLAASLMAIPGGILFARMLSPATQESTVEFTEISFSEKRPASIIEAAAGGAMLGLKIAVGVATVVLAFVALIALINGLIGGLGGVMGFEGVSLQSLFGYIFSPLAYLMGVSSEHIALAGSLIGEKLAINEFVAYVDFSPHLHDGTLDAKTIAVISFALCGFANFGSIAVVVGAFSAVAPERASDIARVGIRALLAATLSNLMSATIAGLFIGLAVAPGV

Flanking regions ( +/- flanking 50bp)

CGGGCATTGCAGCATACAACTGATGAGTATAATAACTACGGGGCCGGATTATGGATTTATTACGGAGTTTGGCGGGGATCGGCGTTTTATTACTGATAGCATTTCTTTTTTCGGTGAATAAACGGAAAATCAGTCTGCGCACTGTCGGCGCGGCACTGCTGTTACAGGTGGCACTCGGTGCCATCATGCTGTATATCCCGGCGGGGAAATGGTTTATTCAGACCATCGCGTCGGGTGTGAACAACGTTATTGCCTACAGTGACGCGGGCAGTTCCTTTATTTTCGGCAGCCTGGTCGGCCCGAAAATGGATGTGTTATTTGACGGCGCCGGGTTTATCTTCGCATTCCGCGTTTTACCGGCCATTATCTTTATCACGTCTCTGATCGCGATTTTGTATTACCTCGGCATTATGCGCTGGGTGATCAACGTTCTGGCGTATGTCTTCCAGAAGACCATGAAAATCAGCAAGATCGAGTCCTTTGCTGCGGTGACCACCATTTTCCTCGGTCAGAATGAGTTACCGGCGGTACTGAAACCCTTTGTCAGCCGGATGAATAACAATGAATTATTCACCGTGATTTGCAGCGGCATGGCCTCCATTGCCGGGTCAATGCTGGTGGGTTACGCCGGACTGGGTGTGCCGATTGAATATCTGCTGGCGGCGTCTCTGATGGCGATTCCGGGCGGGATCCTGTTTGCGCGGATGTTAAGTCCGGCGACACAGGAATCCACCGTGGAATTCACCGAAATCTCCTTTAGTGAAAAACGACCGGCCAGTATTATTGAGGCGGCGGCAGGCGGTGCGATGCTGGGGCTGAAGATTGCCGTTGGTGTGGCAACGGTAGTGCTGGCGTTTGTGGCACTGATTGCCCTGATTAACGGCCTGATTGGCGGCCTCGGCGGCGTTATGGGTTTTGAGGGCGTCAGCCTGCAAAGCCTGTTCGGCTATATTTTCTCACCACTGGCGTATCTTATGGGCGTGAGCAGTGAGCACATTGCGCTGGCAGGCAGCCTGATCGGCGAAAAACTGGCGATCAACGAGTTCGTGGCCTATGTGGATTTCTCTCCGCATTTACACGACGGCACACTGGATGCCAAAACGATTGCAGTGATCTCCTTTGCCTTATGCGGTTTTGCCAACTTCGGCTCGATTGCGGTAGTGGTCGGGGCGTTCAGTGCGGTTGCGCCGGAGCGGGCATCTGATATCGCCCGTGTCGGGATCCGCGCACTGCTGGCGGCGACATTATCCAACCTGATGAGTGCCACCATTGCCGGATTGTTTATCGGCCTGGCCGTGGCACCGGGTGTCTGACCGGTTCAGATGAATGTCCGGTATTTACAGACGCTTCCTTATAAAGGAAG