Orthogroup:group_24


Homologs in group_24

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18 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04810 FBDBKF_04810 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_11115 FBDBKF_11115 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_17770 FBDBKF_17770 Morganella morganii S1 nupC Nucleoside permease NupC
EHELCC_05110 EHELCC_05110 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_06100 EHELCC_06100 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_09795 EHELCC_09795 Morganella morganii S2 nupC Nucleoside permease NupC
NLDBIP_05430 NLDBIP_05430 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_06420 NLDBIP_06420 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_10175 NLDBIP_10175 Morganella morganii S4 nupC Nucleoside permease NupC
LHKJJB_02310 LHKJJB_02310 Morganella morganii S3 nupC Nucleoside permease NupC
LHKJJB_03300 LHKJJB_03300 Morganella morganii S3 nupC Nucleoside permease NupC
LHKJJB_07580 LHKJJB_07580 Morganella morganii S3 nupC Nucleoside permease NupC
HKOGLL_06775 HKOGLL_06775 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_07130 HKOGLL_07130 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_15690 HKOGLL_15690 Morganella morganii S5 nupC Nucleoside permease NupC
F4V73_RS08155 F4V73_RS08155 Morganella psychrotolerans - NupC/NupG family nucleoside CNT transporter
F4V73_RS15195 F4V73_RS15195 Morganella psychrotolerans - NupC/NupG family nucleoside CNT transporter
PMI_RS11960 PMI_RS11960 Proteus mirabilis HI4320 - NupC/NupG family nucleoside CNT transporter

Distribution of group_24 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_24 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_24

Orthogroup content: 18 members

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This page summarizes the annotation of all members of the orthologous group group_24.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nupC 15
2 - 3

Product

# Product Occurence
1 Nucleoside permease NupC 15
2 NupC/NupG family nucleoside CNT transporter 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1972 18 F Nucleotide transport and metabolism (F) Nucleoside permease NupC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03317 13 concentrative nucleoside transporter, CNT family - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01773 18 Na+ dependent nucleoside transporter N-terminus
PF07662 18 Na+ dependent nucleoside transporter C-terminus
PF07670 18 Nucleoside recognition

Annotations of the 21 SwissProt hits

Annotation Number of occurrences
Nucleoside permease NupC 4
Purine nucleoside transport protein NupG 1
Putative nucleoside permease NupX 1
Putative pseudouridine transporter 1
Sodium/nucleoside cotransporter 1 5
Sodium/nucleoside cotransporter 2 3
Solute carrier family 28 member 3 4
Uncharacterized transporter HI_0519 1
Uncharacterized transporter YutK 1

Protein length

Min length 420
Max length 433
Mean length (sd) 422.8 (3.2)
Median length 422.0

Protein length distribution