Homologs in group_24

Help

17 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04810 FBDBKF_04810 52.3 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_11115 FBDBKF_11115 60.0 Morganella morganii S1 nupC Nucleoside permease NupC
FBDBKF_17770 FBDBKF_17770 80.7 Morganella morganii S1 nupC Nucleoside permease NupC
EHELCC_05110 EHELCC_05110 60.0 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_06100 EHELCC_06100 52.3 Morganella morganii S2 nupC Nucleoside permease NupC
EHELCC_09795 EHELCC_09795 80.7 Morganella morganii S2 nupC Nucleoside permease NupC
NLDBIP_05430 NLDBIP_05430 60.0 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_06420 NLDBIP_06420 52.3 Morganella morganii S4 nupC Nucleoside permease NupC
NLDBIP_10175 NLDBIP_10175 80.7 Morganella morganii S4 nupC Nucleoside permease NupC
LHKJJB_02310 LHKJJB_02310 60.0 Morganella morganii S3 nupC Nucleoside permease NupC
LHKJJB_03300 LHKJJB_03300 52.3 Morganella morganii S3 nupC Nucleoside permease NupC
LHKJJB_07580 LHKJJB_07580 80.7 Morganella morganii S3 nupC Nucleoside permease NupC
HKOGLL_06775 HKOGLL_06775 52.3 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_07130 HKOGLL_07130 80.7 Morganella morganii S5 nupC Nucleoside permease NupC
HKOGLL_15690 HKOGLL_15690 60.0 Morganella morganii S5 nupC Nucleoside permease NupC
F4V73_RS08155 F4V73_RS08155 59.5 Morganella psychrotolerans - NupC/NupG family nucleoside CNT transporter
F4V73_RS15195 F4V73_RS15195 80.0 Morganella psychrotolerans - NupC/NupG family nucleoside CNT transporter

Distribution of the homologs in the orthogroup group_24

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_24

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44742 0.0 524 63 5 431 3 HI_0519 Uncharacterized transporter HI_0519 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O25792 1.52e-160 462 57 3 424 3 nupC Nucleoside permease NupC Helicobacter pylori (strain ATCC 700392 / 26695)
O32115 7.71e-158 454 57 4 424 3 yutK Uncharacterized transporter YutK Bacillus subtilis (strain 168)
P33021 1.97e-132 390 50 3 426 1 nupX Putative nucleoside permease NupX Escherichia coli (strain K12)
P33024 3.06e-126 374 50 3 426 1 psuT Putative pseudouridine transporter Escherichia coli (strain K12)
E9PXX9 9.12e-92 293 38 4 425 2 Slc28a1 Sodium/nucleoside cotransporter 1 Mus musculus
O62667 5.92e-91 291 37 4 425 2 SLC28A1 Sodium/nucleoside cotransporter 1 Sus scrofa
Q9UA35 2.25e-90 290 36 4 424 2 SLC28A3 Solute carrier family 28 member 3 Eptatretus stoutii
Q62674 1.15e-89 288 37 4 425 1 Slc28a1 Sodium/nucleoside cotransporter 1 Rattus norvegicus
Q9HAS3 8.7e-87 281 37 4 422 1 SLC28A3 Solute carrier family 28 member 3 Homo sapiens
O00337 1.51e-86 280 37 5 417 1 SLC28A1 Sodium/nucleoside cotransporter 1 Homo sapiens
O88627 1.14e-84 275 35 4 425 1 Slc28a2 Sodium/nucleoside cotransporter 2 Mus musculus
Q8VIH3 2.14e-84 275 37 5 425 2 Slc28a3 Solute carrier family 28 member 3 Rattus norvegicus
Q62773 3.63e-84 274 35 4 425 1 Slc28a2 Sodium/nucleoside cotransporter 2 Rattus norvegicus
Q9ERH8 1.16e-83 273 38 6 384 2 Slc28a3 Solute carrier family 28 member 3 Mus musculus
O43868 7.33e-82 268 35 4 425 1 SLC28A2 Sodium/nucleoside cotransporter 2 Homo sapiens
Q9MZT2 5.77e-79 260 33 4 425 2 SLC28A1 Sodium/nucleoside cotransporter 1 Oryctolagus cuniculus
P39141 2.23e-53 186 30 6 424 2 nupC Nucleoside permease NupC Bacillus subtilis (strain 168)
P0AFF2 2e-50 178 29 8 419 1 nupC Nucleoside permease NupC Escherichia coli (strain K12)
P0AFF3 2e-50 178 29 8 419 3 nupC Nucleoside permease NupC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P42312 1.41e-32 130 25 8 423 1 nupG Purine nucleoside transport protein NupG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11960
Feature type CDS
Gene -
Product NupC/NupG family nucleoside CNT transporter
Location 2645217 - 2646518 (strand: -1)
Length 1302 (nucleotides) / 433 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_24
Orthogroup size 18
N. genomes 7

Actions

Genomic region

Domains

PF01773 Na+ dependent nucleoside transporter N-terminus
PF07662 Na+ dependent nucleoside transporter C-terminus
PF07670 Nucleoside recognition

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1972 Nucleotide transport and metabolism (F) F Nucleoside permease NupC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03317 concentrative nucleoside transporter, CNT family - -

Protein Sequence

MHLIMSLVGMATLILIAILFSSNRRAIKLRTVGGAFLIQIGLGAFVLYSESGRKVLLAISDAVKNVIDYGENGMSFLFAGLVSDKMFELFGSGGFVFALRVLPVIVFFSSLIAVLYYLGIMQFVIKILGGGLQKVLGTSRTESMSATANIFVGQTEAPLVVRPYIARMTTSELFAVMCGGLASVAGSVLAGYASMGVPLEYLITASFMAAPGGLLFAKLLVPETETPDDQKDAFDNLSDEEKPANIIDAAASGASSGLQLALNVGAMLLAFVALIALINGILGGIGGWFGYEDFSLELILGWVFAPIAFLIGVPWSEATIAGSFIGQKLVINEFYAYSEFSKYLQDESQLAAAGLMALSEQTKVIISFALCGFANLSSVAVLLGGLGGMAPNRRKDVARLGMKAVLAGTLSNLMSATIAGFFFALTAMAVVAA

Flanking regions ( +/- flanking 50bp)

ACAAGCTTATTGATAATCCATTAAATTTTTATATGAACAGGGATCCTTCAATGCACCTCATTATGAGCTTGGTCGGAATGGCCACATTGATATTGATAGCCATTCTTTTCTCCAGCAACCGACGTGCAATTAAATTACGCACGGTCGGTGGCGCATTCCTTATTCAAATTGGTTTAGGCGCATTTGTACTTTATTCAGAAAGTGGCCGTAAAGTGTTATTGGCTATTTCTGATGCCGTTAAAAATGTCATCGATTATGGTGAAAACGGCATGAGCTTCCTTTTTGCTGGCTTAGTTTCCGACAAAATGTTTGAGCTATTTGGCAGCGGTGGCTTTGTTTTTGCTTTGCGTGTTTTACCTGTTATTGTGTTCTTCTCTTCATTGATAGCAGTACTTTATTACTTAGGTATCATGCAATTTGTCATCAAGATTTTAGGTGGCGGATTACAAAAAGTATTAGGCACTTCTCGTACTGAATCAATGTCTGCAACAGCCAATATCTTCGTTGGACAAACAGAAGCACCACTGGTGGTTCGCCCCTATATTGCTAGAATGACAACCTCAGAACTTTTTGCGGTGATGTGTGGTGGATTAGCATCAGTGGCAGGTTCGGTACTGGCAGGTTATGCAAGTATGGGTGTGCCATTGGAGTATTTGATCACCGCTTCATTTATGGCGGCACCAGGTGGTTTACTCTTCGCAAAACTCTTGGTTCCTGAAACAGAAACACCTGATGATCAAAAAGATGCTTTTGATAACTTAAGTGATGAAGAAAAACCCGCTAATATTATTGATGCTGCGGCATCAGGGGCTTCTTCAGGATTACAACTTGCGTTAAACGTAGGTGCAATGCTACTCGCTTTTGTCGCATTAATTGCCTTAATTAATGGTATTCTTGGCGGAATTGGTGGCTGGTTCGGTTATGAAGACTTCTCGCTAGAATTAATCTTAGGCTGGGTATTTGCACCAATCGCCTTCTTAATTGGTGTGCCTTGGAGTGAGGCAACCATTGCTGGCTCTTTTATTGGTCAAAAACTGGTGATCAACGAATTCTATGCTTACTCGGAGTTTAGTAAATATCTGCAAGATGAATCACAATTAGCAGCAGCAGGCTTAATGGCCTTGTCTGAACAAACAAAAGTGATTATCTCTTTTGCGCTGTGTGGATTTGCTAACCTTTCCTCTGTTGCGGTATTACTGGGTGGTTTAGGGGGAATGGCACCAAACCGTCGTAAAGATGTCGCACGCTTAGGTATGAAAGCTGTTTTGGCGGGTACACTCTCTAACTTAATGAGTGCAACCATCGCCGGCTTCTTTTTTGCATTAACCGCAATGGCTGTGGTTGCTGCTTAAATAAGAAAGTATTTACAGAGCAGATAGGTAATTGCTTATCTGCTCTTTTT