Homologs in group_843

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04265 FBDBKF_04265 100.0 Morganella morganii S1 pulF Type II secretory pathway, component PulF
EHELCC_05555 EHELCC_05555 100.0 Morganella morganii S2 pulF Type II secretory pathway, component PulF
NLDBIP_05875 NLDBIP_05875 100.0 Morganella morganii S4 pulF Type II secretory pathway, component PulF
HKOGLL_06230 HKOGLL_06230 100.0 Morganella morganii S5 pulF Type II secretory pathway, component PulF
F4V73_RS08710 F4V73_RS08710 66.6 Morganella psychrotolerans - type II secretion system F family protein
PMI_RS10110 PMI_RS10110 32.3 Proteus mirabilis HI4320 - type II secretion system F family protein

Distribution of the homologs in the orthogroup group_843

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_843

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22609 1.26e-58 198 26 3 371 1 pilC Type IV pilus assembly protein PilC Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P36646 1.24e-53 186 29 2 398 3 hofC Protein transport protein HofC homolog Escherichia coli (strain K12)
P45793 1.41e-52 183 25 1 396 3 tapC Type IV pilus assembly protein TapC Aeromonas hydrophila
Q1D0A0 3.67e-52 182 26 3 395 1 pilC Type IV pilus assembly protein PilC Myxococcus xanthus (strain DK1622)
Q9X4G9 1.64e-50 177 27 3 399 3 pilC Type IV pilin assembly protein PilC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P36641 1.51e-43 159 26 4 398 3 pilC Type 4 fimbrial assembly protein PilC Pseudomonas putida
P41441 2.59e-36 139 26 4 341 1 gspF Putative type II secretion system protein F Escherichia coli (strain K12)
P45780 3.95e-36 139 22 3 403 1 epsF Type II secretion system protein F Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P44621 1.71e-35 137 25 5 407 3 hofC Protein transport protein HofC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P31744 4.39e-35 136 23 3 399 3 xpsF Type II secretion system protein F Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q5SK58 7.97e-35 135 24 3 332 1 TTHA0794 Type IV pilus assembly protein PilC Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q5SK58 1.91e-09 62 28 1 131 1 TTHA0794 Type IV pilus assembly protein PilC Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q00513 1.02e-30 124 22 4 404 1 xcpS Type II secretion system protein F Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P31743 7.08e-30 122 22 4 380 3 exeF Type II secretion system protein F Aeromonas hydrophila
P31705 3.41e-27 115 22 5 409 3 outF Type II secretion system protein F Pectobacterium carotovorum subsp. carotovorum
P15745 2.63e-24 106 21 3 360 3 pulF Type II secretion system protein F Klebsiella pneumoniae
P31704 4.2e-22 100 21 9 413 1 outF Type II secretion system protein F Dickeya chrysanthemi
Q9K920 4.9e-08 57 21 6 280 3 comGB ComG operon protein 2 homolog Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P25954 9.11e-07 53 22 9 267 3 comGB ComG operon protein 2 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_02755
Feature type CDS
Gene pulF
Product Type II secretory pathway, component PulF
Location 119466 - 120665 (strand: 1)
Length 1200 (nucleotides) / 399 (amino acids)

Contig

Accession ZDB_360
Length 302856 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_843
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00482 Type II secretion system (T2SS), protein F

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1459 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 NUW Type II secretory pathway, component PulF

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02505 protein transport protein HofC - -

Protein Sequence

MQIYRLYDWSGLTPADKVVTGTLISPSENNAVSQLISQSITPVSLFCRKRLVCSQKEKQYLLHFTRQLATLLTSGLPLLKALTLLAGECSHPLWKEVVRALIRQLQQGKTFTQGIMQYPGLFDSFYCQMATVGEETGKLPECLHTIAQHIQSNRDHRAALIKSIRYPVALLVVCFLMTTLMFLFVIPEFAKIYSSFGAELPALTQWLIRVSGVITGYTTPVMGIMTAIIFIYHVFRRRHPDIKKTESTCILRIPFIGNIIIFSCVSHIFRILAITQQSGITLISGINTLIMTITHPLYKEALTVIREDLLHGKTFSQSIKQSGLFPSLCHELIATSEATGQFGHFFLYTADWFKSLALNQIQTFFKILQPVLFILLAILVAVLLIAMYLPLFRLGEVLV

Flanking regions ( +/- flanking 50bp)

TTTACCATATGCAGGATATTTAACATCCGCTGACCAACAGGAGTGATGCCATGCAAATTTACCGGCTGTATGACTGGTCCGGTCTGACACCCGCTGACAAGGTGGTGACCGGAACGCTTATCTCACCTTCAGAGAATAATGCTGTCAGTCAGCTGATTTCGCAGAGCATCACACCTGTATCACTGTTTTGCCGCAAACGGCTGGTCTGCTCACAAAAAGAAAAACAGTATCTGCTGCACTTTACCCGGCAGCTGGCAACATTACTGACGTCGGGGTTACCGTTACTGAAAGCGCTCACACTACTGGCAGGTGAATGCAGTCACCCGCTCTGGAAAGAAGTAGTCCGTGCTCTTATCAGACAGCTTCAGCAGGGAAAAACATTTACTCAGGGAATAATGCAGTACCCCGGTTTATTTGATTCCTTTTATTGTCAGATGGCCACTGTCGGGGAGGAGACAGGAAAATTGCCGGAGTGCCTTCACACGATTGCACAGCATATTCAGAGTAACCGGGATCACCGGGCTGCATTAATTAAATCAATCCGCTATCCCGTTGCATTGTTAGTTGTTTGTTTTCTGATGACCACATTAATGTTTCTGTTTGTTATTCCTGAATTTGCAAAAATATATAGCTCATTCGGTGCGGAACTTCCGGCTCTGACACAATGGCTGATCCGGGTTTCCGGTGTTATTACCGGTTACACAACCCCGGTAATGGGTATAATGACTGCAATTATATTTATTTATCATGTATTTCGGCGAAGACATCCGGATATAAAAAAAACAGAATCAACCTGTATTCTGCGTATTCCGTTTATCGGAAACATTATTATCTTCAGCTGTGTCTCTCATATTTTCCGGATACTGGCAATAACACAACAATCAGGAATTACACTTATTTCGGGTATTAATACACTTATTATGACAATAACACATCCGTTATATAAAGAGGCATTAACTGTGATACGGGAGGACTTGCTTCACGGAAAAACATTCAGTCAATCAATTAAACAATCCGGGTTATTCCCATCCCTGTGCCATGAGCTGATTGCCACCAGTGAAGCCACCGGACAATTCGGACACTTTTTTCTCTATACCGCAGACTGGTTTAAATCTCTCGCCTTAAACCAAATTCAGACATTTTTTAAAATACTCCAGCCGGTACTGTTTATCCTGCTGGCAATTCTTGTTGCTGTTTTATTAATTGCAATGTATTTACCTTTATTCCGGCTCGGTGAAGTTTTAGTCTGATAAAACTATTCATAATTTAAAGAAACAGATTAAAAAAATTCAAACCTGTG