Homologs in group_843

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04265 FBDBKF_04265 66.6 Morganella morganii S1 pulF Type II secretory pathway, component PulF
EHELCC_05555 EHELCC_05555 66.6 Morganella morganii S2 pulF Type II secretory pathway, component PulF
NLDBIP_05875 NLDBIP_05875 66.6 Morganella morganii S4 pulF Type II secretory pathway, component PulF
LHKJJB_02755 LHKJJB_02755 66.6 Morganella morganii S3 pulF Type II secretory pathway, component PulF
HKOGLL_06230 HKOGLL_06230 66.6 Morganella morganii S5 pulF Type II secretory pathway, component PulF
PMI_RS10110 PMI_RS10110 33.7 Proteus mirabilis HI4320 - type II secretion system F family protein

Distribution of the homologs in the orthogroup group_843

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_843

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22609 7.57e-54 184 24 2 367 1 pilC Type IV pilus assembly protein PilC Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P36646 8.88e-51 177 30 5 365 3 hofC Protein transport protein HofC homolog Escherichia coli (strain K12)
Q9X4G9 4.86e-48 170 26 1 355 3 pilC Type IV pilin assembly protein PilC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q1D0A0 6.69e-44 159 24 4 372 1 pilC Type IV pilus assembly protein PilC Myxococcus xanthus (strain DK1622)
P45793 6.19e-42 154 23 0 334 3 tapC Type IV pilus assembly protein TapC Aeromonas hydrophila
P36641 3.92e-37 141 26 3 368 3 pilC Type 4 fimbrial assembly protein PilC Pseudomonas putida
P31744 1.77e-35 137 24 1 338 3 xpsF Type II secretion system protein F Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P45780 1.87e-35 137 24 5 378 1 epsF Type II secretion system protein F Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q5SK58 1.71e-34 134 25 3 332 1 TTHA0794 Type IV pilus assembly protein PilC Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q5SK58 6.27e-06 51 23 2 152 1 TTHA0794 Type IV pilus assembly protein PilC Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
P41441 6.42e-34 132 25 3 350 1 gspF Putative type II secretion system protein F Escherichia coli (strain K12)
P44621 1.82e-31 126 26 4 375 3 hofC Protein transport protein HofC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P31743 2.06e-31 125 22 4 378 3 exeF Type II secretion system protein F Aeromonas hydrophila
Q00513 2.35e-29 120 22 5 377 1 xcpS Type II secretion system protein F Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P31705 7.62e-29 119 24 5 361 3 outF Type II secretion system protein F Pectobacterium carotovorum subsp. carotovorum
P31704 6.24e-23 102 22 7 349 1 outF Type II secretion system protein F Dickeya chrysanthemi
P15745 2.7e-19 91 21 3 334 3 pulF Type II secretion system protein F Klebsiella pneumoniae
P25954 1.51e-07 56 22 9 330 3 comGB ComG operon protein 2 Bacillus subtilis (strain 168)
Q9K920 0.000336 45 19 3 269 3 comGB ComG operon protein 2 homolog Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08710
Feature type CDS
Gene -
Product type II secretion system F family protein
Location 1802631 - 1803737 (strand: 1)
Length 1107 (nucleotides) / 368 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_843
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00482 Type II secretion system (T2SS), protein F

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1459 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 NUW Type II secretory pathway, component PulF

Protein Sequence

MHQLISQSITPVSLRCHSRLAYSHKEKLYLPHFTQQLATLLISGLPLLRALVLLHNECRLPLWKQVIDDLTRQLQQGKTFTQGVSLYPDIFNSFYCQMITVGEETGKLPECLHHISKHIHDQQHHRTSLITAIRYPVTLLIVSTLMVTLMFLFVIPEFAQIYQSFNAELPLLTRQLILISETITDYALLLSGLLIIILSIYRVLRKKFTYIKIKESRCFLSAPFFGNIIIYTQTAQIFQMLAITQRAGITLIAGMDTLIMTTEHPLYKQALTTIRAELLRGQSFSKSIKQSGLFPELCCEFIATGEATGKFDHFFTYTSDWFKSLALNQIQHFFKILKPALFFLLAIIVALLLISMYLPLFKLGEILV

Flanking regions ( +/- flanking 50bp)

TTAATCAGATCCTGTCCGGTACTATTCTTTCCCGTACAGAAAATGAAGCCATGCACCAGTTAATTTCGCAGAGTATCACACCTGTTTCACTCCGCTGCCACAGCCGTCTGGCATATTCACACAAAGAAAAATTGTATTTACCGCATTTCACACAGCAACTGGCAACATTACTTATTTCCGGGTTGCCGCTGTTACGGGCGCTGGTATTACTTCACAATGAATGTCGGCTTCCGCTCTGGAAACAGGTTATTGATGATCTTACCCGGCAATTACAACAGGGGAAAACATTCACTCAGGGAGTCAGTCTGTATCCTGATATATTTAATTCTTTTTATTGTCAGATGATTACTGTCGGTGAAGAAACAGGTAAATTACCTGAATGTTTACACCATATTTCAAAGCATATTCATGATCAGCAACATCACCGCACATCACTAATAACAGCAATCCGCTATCCTGTTACCTTATTAATCGTCAGCACACTTATGGTTACACTTATGTTTCTCTTTGTTATTCCTGAATTCGCACAAATATATCAGTCATTTAATGCCGAGCTACCTCTGTTGACCCGACAATTAATTCTTATTTCTGAAACAATTACTGACTACGCATTACTCCTTTCAGGTTTACTTATTATTATTTTATCCATTTATCGGGTATTACGAAAGAAATTTACATATATAAAAATAAAAGAGTCCCGCTGTTTTTTATCTGCTCCATTTTTTGGAAATATTATTATTTATACTCAAACCGCACAAATATTTCAGATGCTGGCAATAACACAACGTGCCGGAATTACGCTGATAGCGGGTATGGATACCCTGATTATGACTACTGAACACCCGCTTTACAAACAAGCCTTAACCACAATCAGAGCTGAATTGCTGAGAGGGCAATCATTCAGTAAATCAATTAAACAGTCCGGGCTATTTCCTGAATTATGCTGTGAATTCATTGCTACCGGTGAAGCAACCGGAAAATTTGATCATTTCTTTACCTATACATCAGATTGGTTTAAATCTCTCGCCTTAAATCAAATTCAACATTTTTTTAAGATACTTAAACCTGCTTTATTTTTTCTGCTGGCAATTATCGTCGCTCTCTTATTAATTTCCATGTATTTACCACTATTCAAACTAGGTGAAATTTTAGTCTGAACAAACTATTGTGAATTATTAAATATCAATCCTGTGAAATACATCTGTAT