Homologs in group_843

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04265 FBDBKF_04265 32.3 Morganella morganii S1 pulF Type II secretory pathway, component PulF
EHELCC_05555 EHELCC_05555 32.3 Morganella morganii S2 pulF Type II secretory pathway, component PulF
NLDBIP_05875 NLDBIP_05875 32.3 Morganella morganii S4 pulF Type II secretory pathway, component PulF
LHKJJB_02755 LHKJJB_02755 32.3 Morganella morganii S3 pulF Type II secretory pathway, component PulF
HKOGLL_06230 HKOGLL_06230 32.3 Morganella morganii S5 pulF Type II secretory pathway, component PulF
F4V73_RS08710 F4V73_RS08710 33.7 Morganella psychrotolerans - type II secretion system F family protein

Distribution of the homologs in the orthogroup group_843

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_843

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36646 5.42e-53 184 30 4 397 3 hofC Protein transport protein HofC homolog Escherichia coli (strain K12)
P22609 6.36e-51 178 24 1 361 1 pilC Type IV pilus assembly protein PilC Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9X4G9 1.7e-44 162 26 3 393 3 pilC Type IV pilin assembly protein PilC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P45793 1.22e-43 159 23 2 401 3 tapC Type IV pilus assembly protein TapC Aeromonas hydrophila
P36641 2.95e-38 145 28 5 397 3 pilC Type 4 fimbrial assembly protein PilC Pseudomonas putida
Q1D0A0 6.18e-34 134 22 4 401 1 pilC Type IV pilus assembly protein PilC Myxococcus xanthus (strain DK1622)
P31743 2.49e-30 123 22 3 385 3 exeF Type II secretion system protein F Aeromonas hydrophila
P31744 4.14e-28 117 23 3 403 3 xpsF Type II secretion system protein F Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P45780 6.62e-28 117 21 3 401 1 epsF Type II secretion system protein F Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q5SK58 2.92e-27 115 22 8 419 1 TTHA0794 Type IV pilus assembly protein PilC Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q00513 1.07e-25 110 23 6 402 1 xcpS Type II secretion system protein F Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P44621 1.14e-25 110 26 8 413 3 hofC Protein transport protein HofC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P41441 1.62e-24 107 24 4 400 1 gspF Putative type II secretion system protein F Escherichia coli (strain K12)
P31705 7.41e-21 97 23 4 403 3 outF Type II secretion system protein F Pectobacterium carotovorum subsp. carotovorum
P31704 1.64e-18 90 23 6 401 1 outF Type II secretion system protein F Dickeya chrysanthemi
Q9K920 6.86e-15 78 24 7 311 3 comGB ComG operon protein 2 homolog Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P15745 9.31e-14 75 22 4 394 3 pulF Type II secretion system protein F Klebsiella pneumoniae
P25954 4.51e-05 48 19 4 300 3 comGB ComG operon protein 2 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10110
Feature type CDS
Gene -
Product type II secretion system F family protein
Location 2208987 - 2210186 (strand: 1)
Length 1200 (nucleotides) / 399 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_843
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00482 Type II secretion system (T2SS), protein F

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1459 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 NUW Type II secretory pathway, component PulF

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02505 protein transport protein HofC - -

Protein Sequence

MKLHFIYRYNALTYQGKWLSGNVVAQSKHEVIDQLIQQQKLPVKIRLYRVIIFQNSDKQYRIQLLEQLALLLHSGLALLPALTLLKEECRYLHWQCVLNDIIFHLNQGGALSKQLSRYPLYFPANLTHFIYIGEESGKLDEVLLLQTTQLKNQRDLIKKIIKAFQYPLFLLLTLIVITISMLIYVLPEYQSLYSAFNTELPMLTLTLIRCSQWFSQYSLIILLFILIISYSYYTIKHHSAKFRDIEQRCWLNLPYLGVLLRYHQLHIIFQIMTITQQAGLPLLQGLKIITEQLTHSLYQRALTDMIAHITQGKSLSSFMRHNPLFPPICYQLISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIALITGTLIIAMYLPVLQLGDTIH

Flanking regions ( +/- flanking 50bp)

AAGGGGATCACGTCTTTAGATGAAGTTTATCAAGTAGTCGGAGATATTGAATGAAATTACATTTTATCTATCGCTATAATGCATTAACTTATCAAGGAAAATGGCTAAGTGGCAACGTTGTCGCTCAATCTAAACATGAAGTTATTGATCAACTTATTCAACAACAAAAATTACCAGTAAAAATTCGCCTATATAGGGTAATAATCTTTCAAAATAGTGATAAACAATACCGCATTCAACTTCTTGAACAGTTAGCGTTATTACTTCATTCAGGCTTAGCACTTTTGCCCGCATTAACACTGCTTAAAGAAGAATGTCGTTATTTACATTGGCAATGTGTTTTAAATGATATTATTTTTCACCTAAATCAAGGAGGCGCGCTGTCTAAACAGTTAAGTCGTTATCCACTCTATTTTCCTGCTAATTTAACCCATTTTATTTATATTGGTGAAGAGAGTGGTAAGCTTGATGAAGTTCTCTTATTACAAACAACACAATTAAAAAACCAGCGGGATTTAATAAAAAAAATAATAAAAGCTTTTCAGTATCCTCTATTCTTATTATTAACATTAATCGTTATTACAATATCTATGTTGATCTATGTTTTACCTGAATATCAATCTTTATACAGTGCATTTAATACTGAGCTACCGATGCTAACATTAACCTTAATTAGATGTTCTCAATGGTTTTCTCAATATAGTTTAATTATCCTGCTGTTTATATTAATAATTTCTTATAGCTATTACACTATTAAACACCATAGTGCTAAATTTCGCGACATTGAACAACGATGTTGGCTTAATCTTCCTTACTTGGGGGTCTTATTAAGATATCACCAGCTACATATTATTTTTCAGATAATGACGATTACACAACAAGCTGGATTACCACTGTTACAGGGGTTAAAAATTATTACAGAGCAATTAACGCATTCACTGTATCAACGAGCACTCACTGATATGATAGCGCATATTACTCAAGGCAAATCACTTAGCTCATTTATGCGACATAATCCTCTATTCCCGCCAATCTGTTATCAATTGATCTCTTCAGCAGAAAATTCTGGACAACTACAGTTTTTTTGCCAGCAACTTACCCACTGGTTTTATCATCAATTAGAAGAACGTCTTGATAGTGTAAAAACATGGCTTGAGCCTATTTTAATGACACTGATCGCATTGATTACTGGCACGCTTATTATTGCGATGTATCTTCCGGTGTTACAACTAGGTGATACCATACATTGATGCTAGCAATATCCTAAAGTCATTAACAATGCGTCTAATAATCAAAACAT