Homologs in group_642

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02105 FBDBKF_02105 100.0 Morganella morganii S1 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
EHELCC_02575 EHELCC_02575 100.0 Morganella morganii S2 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
NLDBIP_00885 NLDBIP_00885 100.0 Morganella morganii S4 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
HKOGLL_01190 HKOGLL_01190 100.0 Morganella morganii S5 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
F4V73_RS04470 F4V73_RS04470 96.1 Morganella psychrotolerans - MurR/RpiR family transcriptional regulator
PMI_RS05580 PMI_RS05580 79.3 Proteus mirabilis HI4320 - MurR/RpiR family transcriptional regulator

Distribution of the homologs in the orthogroup group_642

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_642

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46118 1.38e-162 456 76 0 280 3 hexR HTH-type transcriptional regulator HexR Escherichia coli (strain K12)
Q88P32 2.28e-106 313 57 0 276 1 hexR HTH-type transcriptional regulator HexR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
O68281 1.24e-100 298 55 0 276 3 hexR HTH-type transcriptional regulator HexR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q143F8 3.09e-52 183 38 0 256 3 glk Bifunctional protein glk Paraburkholderia xenovorans (strain LB400)
Q62HW8 5.9e-52 182 38 0 256 3 glk Bifunctional protein glk Burkholderia mallei (strain ATCC 23344)
Q2SYA5 8.21e-52 182 38 0 256 3 glk Bifunctional protein glk Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
Q63RQ7 8.64e-52 182 38 0 256 3 glk Bifunctional protein glk Burkholderia pseudomallei (strain K96243)
Q3JPP0 9.48e-52 182 38 0 256 3 glk Bifunctional protein glk Burkholderia pseudomallei (strain 1710b)
Q1BYA7 1.34e-50 179 37 0 256 3 glk Bifunctional protein glk Burkholderia orbicola (strain AU 1054)
Q39IQ1 1.49e-50 179 37 0 256 3 glk Bifunctional protein glk Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)
Q8RD36 6.39e-43 150 35 2 270 4 TTE0211 Uncharacterized HTH-type transcriptional regulator TTE0211 Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q9WYG1 9.57e-32 121 33 4 278 4 TM_0326 Uncharacterized HTH-type transcriptional regulator TM_0326 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q97MK5 8.81e-30 116 31 4 277 4 CA_C0191 Uncharacterized HTH-type transcriptional regulator CA_C0191 Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P44540 1.75e-28 113 31 7 262 4 HI_0143 Uncharacterized HTH-type transcriptional regulator HI_0143 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q45581 5.28e-28 112 29 2 272 1 ybbH Uncharacterized HTH-type transcriptional regulator YbbH Bacillus subtilis (strain 168)
P26833 1.49e-26 108 29 5 258 4 CPE0189 Uncharacterized HTH-type transcriptional regulator CPE0189 Clostridium perfringens (strain 13 / Type A)
A8ADG3 2.66e-21 94 28 2 262 3 murR HTH-type transcriptional regulator MurR Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
P0ACS7 3.21e-19 88 24 1 245 1 rpiR HTH-type transcriptional regulator RpiR Escherichia coli (strain K12)
P0ACS8 3.21e-19 88 24 1 245 3 rpiR HTH-type transcriptional regulator RpiR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q3YZB5 1.55e-18 86 26 3 262 3 murR HTH-type transcriptional regulator MurR Shigella sonnei (strain Ss046)
B7NPW3 1.57e-17 83 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O7:K1 (strain IAI39 / ExPEC)
Q83K75 1.91e-17 83 26 3 262 3 murR HTH-type transcriptional regulator MurR Shigella flexneri
C6UMS6 2.72e-17 83 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain B / REL606)
C5W7D8 2.72e-17 83 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain B / BL21-DE3)
B7N617 3.81e-17 82 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7LKK8 4.01e-17 82 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q0T281 6.18e-17 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Shigella flexneri serotype 5b (strain 8401)
A9MIE1 7.33e-17 82 25 2 262 3 murR HTH-type transcriptional regulator MurR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B1LMM1 7.89e-17 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain SMS-3-5 / SECEC)
A8A2S4 9.16e-17 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O9:H4 (strain HS)
C6UQ16 9.63e-17 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O157:H7 (strain TW14359 / EHEC)
B5YZX2 9.63e-17 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XBJ3 9.63e-17 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O157:H7
B7LCH1 1.13e-16 81 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain 55989 / EAEC)
Q32DC7 1.18e-16 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Shigella dysenteriae serotype 1 (strain Sd197)
P77245 1.18e-16 81 26 5 263 1 murR HTH-type transcriptional regulator MurR Escherichia coli (strain K12)
B1XA98 1.18e-16 81 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain K12 / DH10B)
C4ZVV8 1.18e-16 81 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain K12 / MC4100 / BW2952)
B1IX45 3.14e-16 80 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B6I503 3.79e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain SE11)
B7M6T6 3.79e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli O8 (strain IAI1)
A7ZPM7 3.79e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli O139:H28 (strain E24377A / ETEC)
B2TX16 6.87e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
P46117 7.83e-16 79 25 5 216 4 None Uncharacterized HTH-type transcriptional regulator in aarA 3'region Providencia stuartii
P37767 1.8e-15 77 30 5 218 4 yfhH Uncharacterized HTH-type transcriptional regulator YfhH Escherichia coli (strain K12)
Q31Y52 3.31e-15 77 26 5 263 3 murR HTH-type transcriptional regulator MurR Shigella boydii serotype 4 (strain Sb227)
B1JRW1 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q667V7 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TMY1 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pestis (strain Pestoides F)
Q1CKD6 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R410 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pestis bv. Antiqua (strain Angola)
Q8ZCP8 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pestis
B2KA40 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C5E3 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pestis bv. Antiqua (strain Antiqua)
A7FFU6 0.000338 45 27 7 190 3 murQ N-acetylmuramic acid 6-phosphate etherase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q9YAK0 0.001 43 32 4 124 3 APE_1940.1 Uncharacterized protein APE_1940.1 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_01150
Feature type CDS
Gene rpiR
Product DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
Location 210338 - 211186 (strand: -1)
Length 849 (nucleotides) / 282 (amino acids)

Contig

Accession ZDB_359
Length 392768 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_642
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01380 SIS domain
PF01418 Helix-turn-helix domain, rpiR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1737 Transcription (K) K DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19337 RpiR family transcriptional regulator, carbohydrate utilization regulator - -

Protein Sequence

MNILDRLRNSLDYLSKSEKKVAETILGAPQIAIHSSIATLAKMADVSEPTVNRFCRRLDTKGFPDFKLLLAQSLANGTPYVSRNVDENDSVEAYTGKIFESAMAGLDAVRSTLDMLTINRAVDCLTQARKIAFFGLGASAAVAHDAMNKFFRFNIPVIYSDDVVMQRMSCINSTEGDVVVLISHTGRTKNLVEIARIARENDATVLAITSENSPLAAEASLTIILNVPEDTDIYMPMISRLAQLTIIDVLATGFTLRRGPKFRDNLRRVKEALKDSRIDKLR

Flanking regions ( +/- flanking 50bp)

AATGCAGGTGACCGGTGTGTCACACAGATCAATATAAAAGGCACAGTGGCATGAATATTTTAGACCGTCTCCGTAACAGTCTGGATTATCTGAGTAAATCGGAAAAAAAAGTTGCAGAGACGATCCTCGGCGCACCGCAGATAGCTATTCATTCCAGTATCGCCACACTCGCCAAAATGGCGGATGTCAGTGAACCGACCGTTAACCGGTTCTGCCGCCGTCTGGATACCAAAGGTTTTCCGGATTTCAAACTGCTGCTGGCACAAAGCCTGGCAAACGGCACGCCGTATGTCAGCCGCAATGTGGATGAAAATGATTCCGTTGAGGCATACACCGGCAAAATCTTTGAGTCCGCCATGGCTGGTCTGGATGCAGTCAGAAGCACCCTCGATATGCTGACCATCAACCGCGCCGTGGATTGCCTGACACAAGCCCGGAAAATCGCCTTTTTCGGCCTGGGTGCATCTGCGGCGGTCGCCCATGACGCGATGAATAAATTCTTCCGTTTCAATATCCCGGTGATTTATTCCGACGATGTGGTGATGCAGCGCATGAGTTGTATCAACAGCACCGAAGGTGATGTGGTGGTTTTAATTTCCCACACCGGCCGGACAAAAAACCTGGTTGAAATCGCCCGTATCGCCCGTGAAAATGACGCTACCGTGCTCGCCATCACCTCCGAGAACTCGCCGCTCGCGGCGGAAGCCTCTCTCACCATCATTCTTAATGTACCGGAAGACACTGATATTTATATGCCGATGATCTCCCGTCTGGCACAGCTGACGATTATTGATGTCCTCGCCACCGGTTTTACCCTGCGCCGCGGCCCCAAATTCCGCGATAACCTGCGCCGGGTCAAAGAAGCCCTGAAAGACTCCCGAATAGATAAACTCCGTTGATTTTTAACCATTTGTGTCAATTTGACACATTTCCTGCTGCCGGGTGTAAT