Homologs in group_1473

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6 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09495 FBDBKF_09495 100.0 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_09915 EHELCC_09915 100.0 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_19235 NLDBIP_19235 100.0 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_19135 LHKJJB_19135 100.0 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS10485 F4V73_RS10485 83.5 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS19140 F4V73_RS19140 48.0 Morganella psychrotolerans - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1473

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1473

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_18915
Feature type CDS
Gene hipB
Product Transcriptional regulator, contains XRE-family HTH domain
Location 17419 - 17712 (strand: -1)
Length 294 (nucleotides) / 97 (amino acids)

Contig

Accession ZDB_709
Length 22068 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1473
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MCDNNISLLKEVGFFLKRRRKSQGLTGSEVAEKLNISQQQISRYERGLSVLSPDVMLRYCAALGMTEREISELFSIISTHYQSVISGPEDTDDTDNP

Flanking regions ( +/- flanking 50bp)

CCGGATAAACCTAAAAGGAGTTAAATATCCCGGGTAAATCAGGTTTTGCTATGTGTGATAATAATATATCTCTATTGAAAGAAGTTGGTTTTTTCTTAAAAAGAAGGCGAAAAAGTCAGGGATTAACAGGTTCGGAAGTGGCTGAGAAACTGAATATCAGTCAGCAGCAGATATCCCGCTATGAACGCGGGCTGTCGGTGCTCAGTCCGGATGTCATGCTCAGGTATTGTGCGGCGCTGGGAATGACGGAGCGTGAGATCAGCGAACTTTTCTCCATTATCAGCACCCATTATCAGTCTGTTATTTCCGGACCGGAAGATACAGATGACACTGATAACCCGTAATGCTGACTATCCAACTGTTATGACTCTCCCTTTACGCGTGTATTTAATAT