Homologs in group_70

Help

12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08050 FBDBKF_08050 48.8 Morganella morganii S1 fdnI formate dehydrogenase-N subunit gamma
FBDBKF_16130 FBDBKF_16130 100.0 Morganella morganii S1 fdoI formate dehydrogenase cytochrome b556 subunit
EHELCC_13880 EHELCC_13880 48.8 Morganella morganii S2 fdnI formate dehydrogenase-N subunit gamma
EHELCC_16165 EHELCC_16165 100.0 Morganella morganii S2 fdoI formate dehydrogenase cytochrome b556 subunit
NLDBIP_14325 NLDBIP_14325 48.8 Morganella morganii S4 fdnI formate dehydrogenase-N subunit gamma
NLDBIP_17175 NLDBIP_17175 100.0 Morganella morganii S4 fdoI formate dehydrogenase cytochrome b556 subunit
LHKJJB_08525 LHKJJB_08525 48.8 Morganella morganii S3 fdnI formate dehydrogenase-N subunit gamma
LHKJJB_17095 LHKJJB_17095 100.0 Morganella morganii S3 fdoI formate dehydrogenase cytochrome b556 subunit
HKOGLL_08075 HKOGLL_08075 48.8 Morganella morganii S5 fdnI formate dehydrogenase-N subunit gamma
F4V73_RS12945 F4V73_RS12945 50.9 Morganella psychrotolerans fdnI formate dehydrogenase-N subunit gamma
F4V73_RS17485 F4V73_RS17485 94.9 Morganella psychrotolerans fdoI formate dehydrogenase cytochrome b556 subunit
PMI_RS15385 PMI_RS15385 74.1 Proteus mirabilis HI4320 fdoI formate dehydrogenase cytochrome b556 subunit

Distribution of the homologs in the orthogroup group_70

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_70

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEL0 1.9e-99 290 62 1 211 1 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli (strain K12)
P0AEL1 1.9e-99 290 62 1 211 3 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEL2 1.9e-99 290 62 1 211 3 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli O157:H7
P44451 3.27e-79 239 49 1 214 3 fdxI Formate dehydrogenase, cytochrome b556 subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AEK9 1.24e-70 217 47 2 215 3 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Shigella flexneri
P0AEK7 1.24e-70 217 47 2 215 1 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Escherichia coli (strain K12)
P0AEK8 1.24e-70 217 47 2 215 3 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_16745
Feature type CDS
Gene fdoI
Product formate dehydrogenase cytochrome b556 subunit
Location 16659 - 17309 (strand: 1)
Length 651 (nucleotides) / 216 (amino acids)

Contig

Accession ZDB_698
Length 62170 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_70
Orthogroup size 13
N. genomes 7

Actions

Genomic region

Domains

PF01292 Prokaryotic cytochrome b561

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2864 Energy production and conversion (C) C Cytochrome b subunit of formate dehydrogenase

Kegg Ortholog Annotation(s)

Protein Sequence

MQQDDREKIIRHKPIERVNHWAVVICFLFTAISGLGFFFPSLNWFMNILGTPQLSRLLHPFTGVVMFLLFVFMFFRYFKHNFINRDDIEWAKQIGKIMKNEEAGDVGQYNLGQKGVYWAASICLFLLLLSGIVIWRPYFAEYFSIPVIRIALLVHSISAIGLIITIIVHAYAAIWVKGSVRAMTEGWVTRGWAKKHHPRWYRQIVAKEREEDKKGQ

Flanking regions ( +/- flanking 50bp)

GATGTTCCGGCAAAGACTGAGCAATCAGCAGGTCAGGAGGAGCAGAAATAATGCAACAGGATGATCGCGAAAAAATTATCCGCCACAAACCCATTGAGCGTGTGAATCACTGGGCTGTGGTCATTTGTTTTCTGTTCACGGCCATCAGCGGGCTCGGGTTTTTCTTCCCGTCGCTTAACTGGTTTATGAACATTCTGGGTACCCCGCAGTTATCACGTCTGCTGCATCCGTTTACCGGTGTGGTGATGTTCTTACTGTTTGTGTTTATGTTTTTCCGTTATTTTAAACACAACTTTATCAACCGTGATGATATCGAGTGGGCGAAGCAGATCGGCAAAATCATGAAAAATGAGGAAGCCGGTGATGTCGGTCAGTATAACCTCGGTCAGAAAGGGGTGTACTGGGCGGCCAGTATCTGCCTGTTCCTGCTGTTACTGAGCGGTATCGTTATCTGGCGTCCTTACTTTGCGGAGTATTTCTCCATTCCGGTGATCCGTATCGCGCTGCTGGTACACTCCATTTCCGCTATCGGGCTGATCATCACTATTATTGTTCACGCGTATGCGGCAATCTGGGTGAAAGGGTCAGTGCGTGCGATGACGGAAGGCTGGGTAACGCGCGGCTGGGCGAAGAAACATCACCCGCGCTGGTACCGTCAGATTGTGGCAAAAGAGCGCGAAGAGGATAAAAAAGGTCAGTGACCGTTTTTACTATTCTCGTGTGACCATTCAGAAGGCAGGGATTTCCCTGC