Orthogroup:group_70


Homologs in group_70

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08050 FBDBKF_08050 Morganella morganii S1 fdnI formate dehydrogenase-N subunit gamma
FBDBKF_16130 FBDBKF_16130 Morganella morganii S1 fdoI formate dehydrogenase cytochrome b556 subunit
EHELCC_13880 EHELCC_13880 Morganella morganii S2 fdnI formate dehydrogenase-N subunit gamma
EHELCC_16165 EHELCC_16165 Morganella morganii S2 fdoI formate dehydrogenase cytochrome b556 subunit
NLDBIP_14325 NLDBIP_14325 Morganella morganii S4 fdnI formate dehydrogenase-N subunit gamma
NLDBIP_17175 NLDBIP_17175 Morganella morganii S4 fdoI formate dehydrogenase cytochrome b556 subunit
LHKJJB_08525 LHKJJB_08525 Morganella morganii S3 fdnI formate dehydrogenase-N subunit gamma
LHKJJB_17095 LHKJJB_17095 Morganella morganii S3 fdoI formate dehydrogenase cytochrome b556 subunit
HKOGLL_08075 HKOGLL_08075 Morganella morganii S5 fdnI formate dehydrogenase-N subunit gamma
HKOGLL_16745 HKOGLL_16745 Morganella morganii S5 fdoI formate dehydrogenase cytochrome b556 subunit
F4V73_RS12945 F4V73_RS12945 Morganella psychrotolerans fdnI formate dehydrogenase-N subunit gamma
F4V73_RS17485 F4V73_RS17485 Morganella psychrotolerans fdoI formate dehydrogenase cytochrome b556 subunit
PMI_RS15385 PMI_RS15385 Proteus mirabilis HI4320 fdoI formate dehydrogenase cytochrome b556 subunit

Distribution of group_70 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_70 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_70

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_70.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fdnI 6
2 fdoI 7

Product

# Product Occurence
1 formate dehydrogenase-N subunit gamma 6
2 formate dehydrogenase cytochrome b556 subunit 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2864 13 C Energy production and conversion (C) Cytochrome b subunit of formate dehydrogenase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00127 7 formate dehydrogenase subunit gamma Glyoxylate and dicarboxylate metabolism
Methane metabolism
Metabolic pathways
Microbial metabolism in diverse environments
Carbon metabolism		 -
K08350 6 formate dehydrogenase-N, gamma subunit Two-component system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01292 13 Prokaryotic cytochrome b561

Annotations of the 7 SwissProt hits

Annotation Number of occurrences
Formate dehydrogenase, cytochrome b556 subunit 1
Formate dehydrogenase, cytochrome b556(fdo) subunit 3
Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit 3

Protein length

Min length 216
Max length 219
Mean length (sd) 217.2 (1.1)
Median length 218.0

Protein length distribution