Homologs in group_1958

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14680 FBDBKF_14680 100.0 Morganella morganii S1 tatD metal-dependent hydrolase
EHELCC_15485 EHELCC_15485 100.0 Morganella morganii S2 tatD metal-dependent hydrolase
NLDBIP_16015 NLDBIP_16015 100.0 Morganella morganii S4 tatD metal-dependent hydrolase
LHKJJB_15825 LHKJJB_15825 100.0 Morganella morganii S3 tatD metal-dependent hydrolase
F4V73_RS07475 F4V73_RS07475 95.0 Morganella psychrotolerans - metal-dependent hydrolase
PMI_RS04260 PMI_RS04260 79.2 Proteus mirabilis HI4320 - metal-dependent hydrolase

Distribution of the homologs in the orthogroup group_1958

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1958

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ7 1.02e-142 403 75 0 256 1 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli (strain K12)
P0AFQ8 1.02e-142 403 75 0 256 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ9 1.02e-142 403 75 0 256 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O157:H7
P44718 1.41e-108 317 57 1 259 3 HI_0454 Uncharacterized metal-dependent hydrolase HI_0454 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9J1 7.66e-95 282 47 2 263 3 BUsg_343 Uncharacterized metal-dependent hydrolase BUsg_343 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57436 1.1e-94 281 48 1 264 3 BU355 Uncharacterized metal-dependent hydrolase BU355 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AG7 1.3e-93 279 49 1 257 3 bbp_325 Uncharacterized metal-dependent hydrolase bbp_325 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P37545 3.04e-68 214 40 3 259 3 yabD Uncharacterized metal-dependent hydrolase YabD Bacillus subtilis (strain 168)
P73335 2.02e-62 199 42 4 263 1 dtd3 D-aminoacyl-tRNA deacylase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9PRC8 1.79e-43 151 32 7 262 3 UU017 Uncharacterized metal-dependent hydrolase UU017 Ureaplasma parvum serovar 3 (strain ATCC 700970)
O08343 5.6e-37 134 37 3 199 1 tatD Uncharacterized metal-dependent hydrolase TatD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P47255 1.97e-35 130 34 10 263 3 MG009 Uncharacterized metal-dependent hydrolase MG009 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P78005 4.02e-34 127 32 9 263 3 MPN_009 Uncharacterized metal-dependent hydrolase MPN_009 Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
B7LTZ5 7.42e-33 123 32 3 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A4WFX9 4.74e-32 121 33 3 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter sp. (strain 638)
Q9L6M2 1.23e-31 120 31 3 241 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E8XYF5 2.38e-31 119 30 4 243 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Rahnella sp. (strain Y9602)
Q0SZ31 1.41e-30 117 31 3 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Shigella flexneri serotype 5b (strain 8401)
B2VG45 1.57e-30 117 30 4 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q3U1C6 2.8e-30 117 31 9 270 1 Tatdn3 Putative deoxyribonuclease TATDN3 Mus musculus
D2TUZ4 8.52e-30 115 30 4 264 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter rodentium (strain ICC168)
P27859 1.81e-29 114 31 3 242 1 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia coli (strain K12)
D8MKW4 6.99e-29 113 31 4 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia billingiae (strain Eb661)
A1A4M4 1.53e-28 112 30 9 267 2 TATDN3 Putative deoxyribonuclease TATDN3 Bos taurus
Q58977 2.02e-28 111 28 9 259 3 MJ1582 Uncharacterized metal-dependent hydrolase MJ1582 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A7MQN1 2.27e-28 112 31 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter sakazakii (strain ATCC BAA-894)
Q503T5 5.22e-28 110 31 8 267 2 tatdn3 Putative deoxyribonuclease tatdn3 Danio rerio
A8ACY8 7.75e-28 110 30 3 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
D4ICL5 6e-27 108 30 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)
D4GGR2 6.87e-27 107 30 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea ananatis (strain LMG 20103)
Q17R31 8.71e-27 107 31 8 267 1 TATDN3 Putative deoxyribonuclease TATDN3 Homo sapiens
Q05AV0 6.09e-26 105 30 11 266 2 tatdn3-a Putative deoxyribonuclease tatdn3-A Xenopus laevis
E1SKR8 1.23e-25 104 29 4 241 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea vagans (strain C9-1)
D0Z9R0 1.41e-25 104 28 5 247 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Edwardsiella tarda (strain EIB202)
P44500 1.49e-25 104 25 6 263 3 HI_0081 Uncharacterized metal-dependent hydrolase HI_0081 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B5XYH5 2.56e-25 103 28 4 263 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Klebsiella pneumoniae (strain 342)
E3G381 2.79e-25 103 29 4 243 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter lignolyticus (strain SCF1)
D0KC77 1.09e-24 102 29 4 243 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium parmentieri (strain WPP163)
Q6DAQ1 2.13e-24 101 30 4 208 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C9XTA5 3.64e-24 100 34 3 199 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
C6DI71 1.44e-23 99 28 5 263 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium carotovorum subsp. carotovorum (strain PC1)
C6C4V4 2.53e-23 98 29 4 230 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Musicola paradisiaca (strain Ech703)
P39408 4.91e-23 97 27 5 259 1 yjjV Uncharacterized metal-dependent hydrolase YjjV Escherichia coli (strain K12)
E6WHK1 1.52e-22 96 27 4 243 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea sp. (strain At-9b)
B7XJI2 1.5e-21 94 31 9 202 3 EBI_25826 Putative deoxyribonuclease TATDN1 homolog Enterocytozoon bieneusi (strain H348)
A8G8C4 2.88e-21 92 29 5 241 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Serratia proteamaculans (strain 568)
B1JP69 3.46e-21 92 28 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
E0SLH6 6.97e-21 92 28 4 245 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Dickeya dadantii (strain 3937)
Q148G4 7.98e-19 87 25 8 271 2 TATDN1 Deoxyribonuclease TATDN1 Bos taurus
C4VAS3 2.02e-18 85 26 11 260 3 NCER_101798 Putative deoxyribonuclease TATDN1 homolog Vairimorpha ceranae (strain BRL01)
Q93075 2.12e-18 87 29 8 222 1 TATDN2 Putative deoxyribonuclease TATDN2 Homo sapiens
Q6P8M1 5.27e-18 84 26 9 271 1 Tatdn1 Deoxyribonuclease TATDN1 Mus musculus
Q6GPM3 2.28e-17 82 27 9 266 2 tatdn3-b Putative deoxyribonuclease tatdn3-B Xenopus laevis
Q8SW70 9.65e-16 78 26 8 256 3 ECU03_0200 Putative deoxyribonuclease TATDN1 homolog Encephalitozoon cuniculi (strain GB-M1)
Q9UUF1 1.05e-15 78 28 11 237 3 pi038 Deoxyribonuclease Tat-D Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q6P1N9 6.37e-14 73 23 6 270 1 TATDN1 Deoxyribonuclease TATDN1 Homo sapiens
Q6GML7 5.64e-12 67 26 9 273 1 tatdn1 Deoxyribonuclease TATDN1 Danio rerio
Q640V9 8.24e-12 67 23 8 272 2 tatdn1 Deoxyribonuclease TATDN1 Xenopus laevis
P38430 1.14e-07 55 27 6 200 1 YMR262W Uncharacterized deoxyribonuclease YMR262W Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q58171 1.62e-06 51 22 9 215 3 MJ0761 Uncharacterized metal-dependent hydrolase MJ0761 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58778 5.83e-06 49 31 7 127 3 MJ1383 Uncharacterized protein MJ1383 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_14945
Feature type CDS
Gene tatD
Product metal-dependent hydrolase
Location 50438 - 51217 (strand: 1)
Length 780 (nucleotides) / 259 (amino acids)

Contig

Accession ZDB_694
Length 115897 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1958
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01026 TatD related DNase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0084 Cell motility (N) N 3'->5' ssDNA/RNA exonuclease TatD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03424 TatD DNase family protein [EC:3.1.21.-] - -

Protein Sequence

MFLVDSHCHLDCLDYEKKHESVDDVMQKAAQRDVKYALAVATTLPGYTKMRELIGERPDVAFSCGIHPLNLDEPYDFTQLRELAADKRVVALGETGLDYYYQKENAALQRDVFREHIRIGRELNKPVIVHTRDAREDTLAIIREEQAGECGGVLHCFTEDKETASALLDEGFYISFSGIVTFRNAEQIREAARIVPLDRILVETDSPYLAPVPFRGKENQPAYVRDVAEYMAVLKGVSVEALAEITTDNFCRLFQVSVR

Flanking regions ( +/- flanking 50bp)

CCAGGAAACCCTGTTTTCTGCATCACCTAATTTAAAATAATGAGTTAATTATGTTTTTAGTCGATTCCCATTGCCACCTCGATTGCCTGGATTATGAAAAAAAGCATGAAAGTGTGGACGATGTTATGCAAAAGGCCGCGCAGCGAGATGTGAAATACGCACTGGCGGTGGCGACAACCCTGCCGGGTTACACAAAAATGCGCGAGCTGATCGGTGAGCGCCCGGATGTGGCCTTTTCCTGTGGTATTCATCCGCTGAATCTGGATGAGCCGTATGATTTCACACAACTGCGTGAACTGGCGGCGGATAAACGGGTGGTGGCCCTCGGTGAAACCGGGCTGGATTACTACTATCAGAAAGAGAATGCCGCGCTTCAGCGTGATGTTTTCCGCGAGCATATCCGTATCGGCCGTGAGCTGAATAAACCGGTGATTGTCCACACCCGCGATGCCCGTGAGGATACCCTGGCGATTATCCGCGAAGAACAGGCCGGGGAGTGCGGCGGCGTGTTACACTGCTTTACCGAAGACAAAGAGACGGCATCAGCGCTGCTGGATGAAGGTTTTTATATCTCCTTTTCCGGCATCGTGACGTTCCGCAATGCGGAGCAGATCCGCGAAGCCGCCCGCATTGTCCCGCTGGATCGCATTCTGGTGGAAACCGATTCGCCGTATCTGGCCCCGGTACCGTTTCGCGGTAAAGAGAACCAGCCCGCGTATGTGCGTGATGTGGCGGAGTATATGGCTGTATTAAAAGGGGTGAGCGTTGAGGCGCTTGCTGAGATCACCACTGACAATTTCTGCCGTCTGTTTCAGGTGTCTGTCCGGTAAATCCGCACACATCTGTCAGGCTGATTAATTACAGGAGCAGGTTATGGCCG