Homologs in group_1711

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11935 FBDBKF_11935 100.0 Morganella morganii S1 rlmJ 23S rRNA A2030 N6-methylase RlmJ
EHELCC_14370 EHELCC_14370 100.0 Morganella morganii S2 rlmJ 23S rRNA A2030 N6-methylase RlmJ
NLDBIP_15465 NLDBIP_15465 100.0 Morganella morganii S4 rlmJ 23S rRNA A2030 N6-methylase RlmJ
LHKJJB_15145 LHKJJB_15145 100.0 Morganella morganii S3 rlmJ 23S rRNA A2030 N6-methylase RlmJ
F4V73_RS14730 F4V73_RS14730 89.3 Morganella psychrotolerans - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ
PMI_RS14010 PMI_RS14010 79.3 Proteus mirabilis HI4320 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ

Distribution of the homologs in the orthogroup group_1711

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1711

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37634 3.43e-164 459 76 0 280 1 rlmJ Ribosomal RNA large subunit methyltransferase J Escherichia coli (strain K12)
P31777 2.11e-139 397 66 1 281 1 rlmJ Ribosomal RNA large subunit methyltransferase J Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_14265
Feature type CDS
Gene rlmJ
Product 23S rRNA A2030 N6-methylase RlmJ
Location 22162 - 23004 (strand: -1)
Length 843 (nucleotides) / 280 (amino acids)

Contig

Accession ZDB_693
Length 123756 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1711
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2961 Translation, ribosomal structure and biogenesis (J) J 23S rRNA A2030 N6-methylase RlmJ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07115 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] - -

Protein Sequence

MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLSGEHAERTGEYLEGIARIWAQESVPEELKTYLEAVSALNPRGDLRFYPGSPLIAAHLLRDHDKLNISELHPSDFPLLRNEFSRDNRARVVREDGYQQLKSQLPPLSRRGFVLIDPPYELKSDYQAVVKGIQEGHRRFATGTYAVWYPVVLRQQIKRMVKDFQATGIRKILQIELAVRPDSDQRGMTASGMIVINPPWKLESQMKSVLPWLHKVLVPEGTGHTLVEWITPE

Flanking regions ( +/- flanking 50bp)

CTGATATTCTTGTTCCGGGTGGTGCACACCCGACCATCTGAGGCCCTTGTATGCTTAGTTACCGCCACAGCTTTCACGCCGGCAACCATGCGGATGTGTTAAAACACACCGTCCAGAGTCTGATCATTGAATCATTAAAAGAGAAAGACAAACCCTTTTTGTATCTGGATACGCACGCCGGTGCCGGGCGTTATCAGCTCAGTGGTGAGCATGCGGAGCGTACCGGGGAGTACCTGGAAGGGATCGCCCGTATCTGGGCGCAGGAATCGGTGCCGGAAGAACTGAAAACGTATCTTGAAGCCGTCAGTGCACTGAATCCGCGTGGTGACCTGCGTTTTTATCCGGGTTCGCCTCTGATCGCCGCACATTTACTGCGTGATCACGACAAATTAAATATCAGCGAACTGCACCCGTCTGATTTCCCGCTGCTGCGCAATGAATTCAGCCGTGATAACCGTGCCCGTGTGGTGCGGGAAGATGGTTATCAGCAGCTGAAATCACAGTTACCGCCGTTATCCCGGCGCGGATTTGTGCTGATTGACCCGCCGTATGAACTGAAAAGTGATTATCAGGCCGTGGTGAAAGGGATTCAGGAAGGTCACCGCCGCTTTGCGACCGGGACTTATGCGGTCTGGTATCCGGTGGTGCTGCGCCAGCAGATCAAACGGATGGTAAAAGATTTCCAGGCAACCGGGATCCGCAAGATTCTGCAAATCGAGCTGGCGGTGCGCCCTGACAGTGATCAGCGCGGTATGACCGCATCCGGCATGATTGTGATTAACCCGCCGTGGAAGCTGGAATCGCAGATGAAATCCGTGCTGCCGTGGCTGCATAAAGTGCTGGTACCGGAAGGTACAGGGCATACACTGGTTGAATGGATCACACCGGAATAATTCGTTTCCGCTGCGGGCATGACAGCAGCGGGTGTTTATGTATTGACTGA