Homologs in group_1711

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11935 FBDBKF_11935 79.3 Morganella morganii S1 rlmJ 23S rRNA A2030 N6-methylase RlmJ
EHELCC_14370 EHELCC_14370 79.3 Morganella morganii S2 rlmJ 23S rRNA A2030 N6-methylase RlmJ
NLDBIP_15465 NLDBIP_15465 79.3 Morganella morganii S4 rlmJ 23S rRNA A2030 N6-methylase RlmJ
LHKJJB_15145 LHKJJB_15145 79.3 Morganella morganii S3 rlmJ 23S rRNA A2030 N6-methylase RlmJ
HKOGLL_14265 HKOGLL_14265 79.3 Morganella morganii S5 rlmJ 23S rRNA A2030 N6-methylase RlmJ
F4V73_RS14730 F4V73_RS14730 77.5 Morganella psychrotolerans - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ

Distribution of the homologs in the orthogroup group_1711

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1711

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37634 2.45e-157 442 74 0 280 1 rlmJ Ribosomal RNA large subunit methyltransferase J Escherichia coli (strain K12)
P31777 6.42e-138 393 67 1 281 1 rlmJ Ribosomal RNA large subunit methyltransferase J Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14010
Feature type CDS
Gene -
Product 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ
Location 3110890 - 3111732 (strand: -1)
Length 843 (nucleotides) / 280 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1711
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2961 Translation, ribosomal structure and biogenesis (J) J 23S rRNA A2030 N6-methylase RlmJ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07115 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] - -

Protein Sequence

MLSYRHSFHAGNHADVLKHIVQTLIIESLKEKEKPFLYLDTHAGAGRYQLTNAHATRTGEYLEGIARLWQQEEVPELILPYLEAVGSLNTSDELRYYPGSPLLAAKLLREQDLLMLTELHPTDFPLLRTEFSRDKRVRVCREDGFGQLKSKLPPASRRGFALIDPPYELKQDYSAVVKGIVEGYKRFATGTYAIWYPVVHRQQIKRMLKELEATGIRKILQIELAVKPDSDQLGMTASGMIVINPPWKLASQMASILPWLHKTLVPEGTGHTLVEWVVPE

Flanking regions ( +/- flanking 50bp)

CAGAGTAAGTTAATTACTTTGCTATGCCCATTTCTAACGGAAGATAAAGAATGCTGAGCTATCGTCATAGTTTCCACGCTGGCAACCACGCCGATGTATTAAAACATATTGTTCAAACCCTGATTATTGAGTCTTTAAAAGAGAAAGAAAAACCGTTTCTTTATTTGGATACTCATGCTGGCGCTGGACGTTATCAGCTCACCAATGCACATGCGACTCGCACGGGAGAATACTTAGAAGGCATTGCACGCTTATGGCAACAAGAAGAGGTGCCTGAGCTTATCTTGCCTTATTTGGAGGCGGTCGGTTCGTTAAATACATCTGATGAGTTACGTTATTATCCCGGCTCTCCTTTATTGGCTGCTAAATTATTGCGTGAGCAAGATCTGTTAATGCTAACCGAATTACATCCTACCGATTTCCCTTTATTACGTACGGAATTTTCCCGCGATAAACGTGTGAGAGTGTGTCGGGAAGATGGCTTTGGACAATTAAAATCAAAACTCCCTCCCGCCAGTCGTCGTGGGTTTGCTTTAATTGATCCACCTTATGAACTTAAACAAGATTATAGTGCGGTTGTTAAAGGCATTGTGGAAGGCTATAAACGTTTCGCCACCGGGACCTATGCAATTTGGTATCCTGTTGTGCATCGCCAACAAATTAAACGGATGCTAAAAGAGCTAGAGGCCACCGGTATTCGTAAAATTCTGCAAATTGAGTTGGCAGTGAAACCAGATAGTGATCAACTAGGTATGACAGCATCAGGTATGATTGTTATTAACCCACCTTGGAAATTGGCATCACAAATGGCGTCTATCTTGCCTTGGCTACATAAAACCTTGGTTCCTGAAGGTACTGGACACACATTAGTTGAATGGGTTGTACCAGAATAAGTCATTTATTACTGTTTTACCTATTACTGTAAAAGCGAAAACCTAACCTG