Homologs in group_1751

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11935 FBDBKF_11935 89.3 Morganella morganii S1 rlmJ 23S rRNA A2030 N6-methylase RlmJ
EHELCC_14370 EHELCC_14370 89.3 Morganella morganii S2 rlmJ 23S rRNA A2030 N6-methylase RlmJ
NLDBIP_15465 NLDBIP_15465 89.3 Morganella morganii S4 rlmJ 23S rRNA A2030 N6-methylase RlmJ
LHKJJB_15145 LHKJJB_15145 89.3 Morganella morganii S3 rlmJ 23S rRNA A2030 N6-methylase RlmJ
HKOGLL_14265 HKOGLL_14265 89.3 Morganella morganii S5 rlmJ 23S rRNA A2030 N6-methylase RlmJ
PMI_RS14010 PMI_RS14010 77.5 Proteus mirabilis HI4320 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ

Distribution of the homologs in the orthogroup group_1751

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1751

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37634 6.25e-161 451 76 0 280 1 rlmJ Ribosomal RNA large subunit methyltransferase J Escherichia coli (strain K12)
P31777 3.57e-139 396 66 1 281 1 rlmJ Ribosomal RNA large subunit methyltransferase J Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14730
Feature type CDS
Gene -
Product 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ
Location 181431 - 182273 (strand: 1)
Length 843 (nucleotides) / 280 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000004
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1751
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2961 Translation, ribosomal structure and biogenesis (J) J 23S rRNA A2030 N6-methylase RlmJ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07115 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] - -

Protein Sequence

MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLSGEHAERTGEYLEGIGRLWAQEACPEELTAYLEAVSALNPRKELRFYPGSPLIAAHLLRYDDKLSLSELHPSDFPLLRSEFSGDYRARVIREDGYQQLRSQLPPQSRRGLVLIDPPYEMKTDYQDVVKGVQEGYRRFATGTYAIWYPVVMRQQIKRMVKEFQATGIRKILQIELAVRPDSDQRGMTASGMIVINPPWKLESQMKAVLPWLHNVLVPEGTGHTRVEWITPE

Flanking regions ( +/- flanking 50bp)

CTGATATTCTTGTTCCGGGTGGTTCACACCCGACCATCTGAGGCCCATGTATGCTTAGTTACCGCCACAGCTTTCACGCCGGCAATCATGCGGATGTGTTAAAGCACACCGTCCAGAGTCTGATCATTGAGTCATTAAAAGAGAAAGACAAACCGTTTTTGTATCTGGATACGCACGCAGGCGCCGGGCGTTATCAGCTCAGTGGTGAGCATGCCGAACGAACCGGAGAATACCTGGAAGGGATTGGACGGCTCTGGGCACAGGAAGCCTGTCCTGAAGAACTGACCGCTTATCTGGAGGCCGTCAGTGCACTGAATCCGCGCAAAGAACTGCGTTTTTATCCGGGCTCACCGCTGATCGCCGCACATCTGCTGCGTTACGATGACAAACTGAGTCTCAGTGAATTGCATCCGTCTGATTTTCCGCTGCTGCGCAGCGAATTCAGTGGTGACTACCGCGCCCGTGTTATCCGCGAAGATGGTTATCAGCAGCTGCGCTCACAATTACCGCCACAGTCCCGCCGTGGTCTGGTTCTGATTGATCCGCCGTATGAAATGAAAACGGATTATCAGGATGTGGTAAAAGGTGTTCAGGAAGGTTACCGCCGTTTTGCAACCGGCACTTATGCAATCTGGTATCCGGTTGTGATGCGCCAGCAAATCAAGCGTATGGTAAAAGAGTTTCAGGCAACAGGTATCCGCAAAATTCTGCAAATCGAACTGGCGGTGCGCCCTGACAGTGATCAGCGCGGCATGACAGCATCCGGCATGATTGTTATCAATCCGCCGTGGAAACTGGAATCACAAATGAAAGCCGTGTTACCGTGGCTGCATAATGTACTGGTGCCGGAAGGTACGGGTCATACACGGGTTGAATGGATTACGCCGGAATAATTAGTTTCCGCCGCCTGTACTACATCTGCGGCGGGTGTTTATGTATTGAC