Homologs in group_1614

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10635 FBDBKF_10635 100.0 Morganella morganii S1 phrB deoxyribodipyrimidine photo-lyase
EHELCC_14970 EHELCC_14970 100.0 Morganella morganii S2 phrB deoxyribodipyrimidine photo-lyase
NLDBIP_14800 NLDBIP_14800 100.0 Morganella morganii S4 phrB deoxyribodipyrimidine photo-lyase
LHKJJB_14545 LHKJJB_14545 100.0 Morganella morganii S3 phrB deoxyribodipyrimidine photo-lyase
F4V73_RS14345 F4V73_RS14345 81.6 Morganella psychrotolerans phrB deoxyribodipyrimidine photo-lyase
PMI_RS15965 PMI_RS15965 53.7 Proteus mirabilis HI4320 phrB deoxyribodipyrimidine photo-lyase

Distribution of the homologs in the orthogroup group_1614

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1614

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P25078 7.81e-166 479 52 6 473 1 phrB Deoxyribodipyrimidine photo-lyase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P00914 1.37e-164 476 50 6 469 1 phrB Deoxyribodipyrimidine photo-lyase Escherichia coli (strain K12)
Q9KNA8 5.8e-138 408 47 5 470 1 phrA Deoxyribodipyrimidine photo-lyase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P57386 6.56e-130 388 39 6 475 3 phrB Deoxyribodipyrimidine photo-lyase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AJ9 9.96e-122 367 36 4 471 3 phrB Deoxyribodipyrimidine photo-lyase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P27526 8.45e-98 310 36 10 504 3 phr Deoxyribodipyrimidine photo-lyase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q04449 1.8e-93 294 39 14 486 3 phr Deoxyribodipyrimidine photo-lyase Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4)
Q55081 7.73e-84 270 38 14 476 1 phrA Deoxyribodipyrimidine photo-lyase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P05327 9.03e-81 261 37 11 470 1 phr Deoxyribodipyrimidine photo-lyase Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
A9CJC9 1.57e-77 253 34 11 497 1 phrA Deoxyribodipyrimidine photo-lyase Agrobacterium fabrum (strain C58 / ATCC 33970)
P05066 3.92e-75 249 31 8 502 1 PHR1 Deoxyribodipyrimidine photo-lyase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9HQ46 7.51e-69 230 34 12 484 3 phr Deoxyribodipyrimidine photo-lyase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P12768 1.73e-67 226 35 10 470 3 phr Deoxyribodipyrimidine photo-lyase Streptomyces griseus
P61496 5.44e-63 213 36 12 426 1 phr Deoxyribodipyrimidine photo-lyase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
P61497 1.3e-58 202 35 10 424 1 phr Deoxyribodipyrimidine photo-lyase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q3IPX9 7.19e-54 191 33 16 476 3 cry Cryptochrome DASH Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
P77967 2.61e-47 173 29 13 475 1 cry Cryptochrome DASH Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q7NMD1 3.19e-47 173 30 14 475 3 cry Cryptochrome DASH Gloeobacter violaceus (strain ATCC 29082 / PCC 7421)
Q96524 1.37e-44 168 28 10 485 1 CRY2 Cryptochrome-2 Arabidopsis thaliana
P40115 1.26e-43 164 28 13 507 2 PHR1 Cryptochrome-1 Sinapis alba
Q49AN0 1.42e-42 162 28 15 485 1 CRY2 Cryptochrome-2 Homo sapiens
O48652 3.17e-42 160 28 18 500 1 UVR3 (6-4)DNA photolyase Arabidopsis thaliana
Q7UJB1 1.71e-41 157 27 15 488 3 cry Cryptochrome DASH Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)
Q9R194 1.02e-40 157 28 15 484 1 Cry2 Cryptochrome-2 Mus musculus
Q923I8 2.85e-39 153 27 14 490 1 Cry2 Cryptochrome-2 Rattus norvegicus
Q4KML2 5.4e-39 151 28 20 487 2 cry-dash Cryptochrome DASH Danio rerio
Q43125 6.5e-39 153 28 9 482 1 CRY1 Cryptochrome-1 Arabidopsis thaliana
Q8QG60 6.87e-38 149 27 16 487 2 CRY2 Cryptochrome-2 Gallus gallus
Q0E2Y1 7.09e-38 148 26 16 513 3 UVR3 (6-4)DNA photolyase Oryza sativa subsp. japonica
Q5QXE0 7.77e-38 147 28 13 446 3 cry Cryptochrome DASH Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Q5IFN2 1.84e-37 147 28 16 488 3 Ot01g06470 Cryptochrome DASH, chloroplastic/mitochondrial Ostreococcus tauri
Q651U1 2.78e-37 147 30 19 476 2 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Oryza sativa subsp. japonica
Q38JU2 3.13e-37 147 29 16 466 2 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Solanum lycopersicum
Q75WS4 4.21e-37 146 28 18 469 2 cry-dash Cryptochrome DASH Xenopus laevis
Q6ZZY0 4.97e-35 141 27 14 483 2 CRY1 Cryptochrome-1 Sylvia borin
Q5IZC5 6.26e-35 141 26 13 479 2 CRY1 Cryptochrome-1 Erithacus rubecula
Q8WP19 1.27e-34 140 27 15 483 2 CRY1 Cryptochrome-1 Macaca fascicularis
Q16526 1.4e-34 139 26 15 483 1 CRY1 Cryptochrome-1 Homo sapiens
Q8QG61 1.63e-34 140 27 14 483 2 CRY1 Cryptochrome-1 Gallus gallus
Q70AD6 5.65e-34 138 26 15 483 2 CRY1 Cryptochrome-1 Spalax judaei
Q32Q86 1.01e-33 137 33 8 276 1 Cry1 Cryptochrome-1 Rattus norvegicus
P97784 1.34e-33 137 33 8 276 1 Cry1 Cryptochrome-1 Mus musculus
Q7PYI7 9.9e-33 134 31 9 269 2 Cry1 Cryptochrome-1 Anopheles gambiae
Q9KR33 3.58e-32 131 27 15 430 1 cry1 Cryptochrome DASH Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
O77059 4.73e-32 132 30 10 293 1 cry Cryptochrome-1 Drosophila melanogaster
Q84KJ5 3.42e-31 129 26 12 447 1 CRYD Cryptochrome DASH, chloroplastic/mitochondrial Arabidopsis thaliana
B0WRR9 1.99e-30 127 32 7 243 3 cry Cryptochrome-1 Culex quinquefasciatus
Q17DK5 1.16e-29 125 31 4 231 3 cry Cryptochrome-1 Aedes aegypti
Q293P8 1.21e-29 125 31 7 252 3 cry Cryptochrome-1 Drosophila pseudoobscura pseudoobscura
Q87JP5 7.85e-28 118 27 18 442 3 cry Cryptochrome DASH Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q9KS67 1.91e-26 115 26 15 475 1 cry2 Cryptochrome-like protein cry2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q7SI68 3.75e-25 112 28 12 350 3 cry Putative cryptochrome DASH, mitochondrial Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q4I1Q6 1.8e-19 95 29 9 278 3 FGRRES_16955 Putative cryptochrome DASH Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
Q05380 2.52e-17 85 28 6 292 4 None Uncharacterized 31.6 kDa protein in atpI 5'region Synechococcus sp. (strain PCC 6716)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_13165
Feature type CDS
Gene phrB
Product deoxyribodipyrimidine photo-lyase
Location 49351 - 50790 (strand: 1)
Length 1440 (nucleotides) / 479 (amino acids)

Contig

Accession ZDB_691
Length 141725 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1614
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00875 DNA photolyase
PF03441 FAD binding domain of DNA photolyase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0415 Replication, recombination and repair (L) L Deoxyribodipyrimidine photolyase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] - -

Protein Sequence

MTDSAPAVVWLRHDLRLTDNTALYAACQAHRQVKLIFTLTPGQWEQHAMSPSQKALIFCQLHALNTSAAALGITLHVQPCHTFEDAADWLAAWCGEHHIPAVYVNKQYGLNEQRRDTRFAAHLPDTCRFYAFDDSVLLPPGSVSTQQGGLYKVFTPFRRAFLTTLMQTTVRVLPVPEAKGPPVSPAPLNLPQQEHALFPSGEEAALQRLADFCQKHAADYKTERDFPAIDGTSRISAYLATGILSPRQCLSRLRLHFPMVADEPESGAYTWLSELIWREFYLHQLAQHPDISRHRPMQRWTESIIWSPDNSGLLAWQQGKTGFPLVDAAMRQLNETGWMHNRLRMITASFLVKDLLTDWRRGEHYFMSRLIDGEFAANNGGWQWAASTGHDSVPYFRIFNPVTQGKRFDPDGSFIRRWLPELAEVPAKYIHTPHEWAEKNQREIDYPKPVVNHRMARIRAIDAYETARRTAAGGDDNPY

Flanking regions ( +/- flanking 50bp)

CCGCCTCTCCGGACGCGGACCTTTTTATTGTTTATGCGGGAGGTAAAGTTATGACGGACTCAGCACCGGCCGTTGTCTGGCTGCGGCACGATCTGCGGCTGACAGATAACACGGCGCTTTACGCCGCCTGTCAGGCACACCGGCAGGTAAAACTGATTTTTACACTCACGCCGGGACAGTGGGAGCAGCACGCTATGTCCCCGTCACAGAAGGCGCTGATTTTCTGTCAGCTGCACGCGCTGAACACATCCGCAGCCGCACTCGGGATCACCCTGCATGTGCAGCCGTGCCATACCTTTGAGGATGCCGCTGACTGGCTGGCCGCATGGTGCGGGGAACATCACATCCCCGCTGTCTATGTCAATAAACAGTACGGGCTGAATGAACAGCGCCGTGATACCCGCTTTGCCGCCCATCTGCCGGACACCTGCCGTTTTTATGCCTTTGATGACAGTGTTCTGCTGCCGCCGGGCAGTGTGAGCACACAACAGGGCGGGCTCTACAAAGTGTTCACTCCGTTCCGGCGGGCCTTTCTCACCACACTGATGCAGACCACCGTCCGCGTGCTGCCGGTACCGGAGGCCAAAGGCCCGCCGGTCTCCCCGGCACCGCTTAATCTGCCGCAGCAGGAGCATGCCCTTTTCCCTTCCGGAGAAGAGGCCGCACTGCAGCGGCTGGCGGATTTTTGTCAGAAGCATGCTGCGGATTACAAAACAGAACGGGATTTTCCGGCGATTGACGGCACCAGCCGCATCTCCGCGTATCTCGCCACCGGAATTTTGTCCCCCCGCCAGTGCCTGAGCCGTCTGCGCCTGCATTTCCCGATGGTCGCTGATGAGCCGGAAAGCGGCGCTTATACCTGGCTCAGTGAGCTTATCTGGCGGGAATTTTATCTGCATCAGCTGGCACAGCACCCGGATATCAGCCGTCACCGCCCGATGCAGCGCTGGACAGAGTCCATTATCTGGTCACCGGATAACAGCGGGCTGCTTGCCTGGCAGCAGGGCAAAACCGGATTCCCGCTGGTCGATGCAGCTATGCGTCAGCTGAATGAAACAGGCTGGATGCATAACCGTCTGCGGATGATCACGGCAAGTTTTCTGGTCAAGGATTTACTGACTGACTGGCGGCGCGGCGAGCACTATTTTATGTCACGGCTGATTGATGGTGAATTTGCCGCCAATAACGGCGGCTGGCAGTGGGCGGCCTCCACCGGTCATGATTCGGTGCCGTATTTCCGGATTTTCAACCCGGTCACGCAGGGAAAACGGTTTGATCCGGACGGCAGCTTTATCCGCCGCTGGCTGCCGGAGCTGGCAGAAGTACCTGCGAAATACATTCATACACCCCATGAATGGGCGGAGAAAAATCAGCGTGAGATTGATTATCCGAAACCGGTGGTGAATCACCGGATGGCGAGGATCCGCGCTATCGATGCTTACGAAACCGCCCGCCGGACCGCTGCCGGCGGGGATGATAATCCGTATTAATCTGTTTTGTCTGCTGACCGGCGCACAGTGCTGTAGGTCAGCAGATGCTC