COG0415


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0415, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Deoxyribodipyrimidine photolyase
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0415 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1614 FBDBKF_10635 90946 92385 -1 phrB deoxyribodipyrimidine photo-lyase Morganella morganii S1
1 group_1614 EHELCC_14970 90936 92375 -1 phrB deoxyribodipyrimidine photo-lyase Morganella morganii S2
2 group_1614 NLDBIP_14800 90936 92375 -1 phrB deoxyribodipyrimidine photo-lyase Morganella morganii S4
3 group_1614 LHKJJB_14545 49351 50790 1 phrB deoxyribodipyrimidine photo-lyase Morganella morganii S3
4 group_1614 HKOGLL_13165 49351 50790 1 phrB deoxyribodipyrimidine photo-lyase Morganella morganii S5
5 group_1614 F4V73_RS14345 93432 94865 -1 phrB deoxyribodipyrimidine photo-lyase Morganella psychrotolerans
6 group_1614 PMI_RS15965 3546054 3547484 -1 phrB deoxyribodipyrimidine photo-lyase Proteus mirabilis HI4320